miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 5' -56.9 NC_006146.1 + 39915 0.78 0.258528
Target:  5'- gUCCACGUCCAGGggacaaacUCCUCCAUCuCugGa -3'
miRNA:   3'- aAGGUGCGGGUUC--------AGGAGGUAG-GugC- -5'
28779 5' -56.9 NC_006146.1 + 105047 0.71 0.615382
Target:  5'- cUCCGCGUCCAuAGUCaCaUCGUCCAUGg -3'
miRNA:   3'- aAGGUGCGGGU-UCAG-GaGGUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 50320 0.71 0.645892
Target:  5'- -gCCuuGUCCAGGUCaaacuugCCAUCCGCGg -3'
miRNA:   3'- aaGGugCGGGUUCAGga-----GGUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 146709 0.66 0.894786
Target:  5'- cUCgCAgGCCCAGcccUCCUCUgcccuGUCCACGu -3'
miRNA:   3'- aAG-GUgCGGGUUc--AGGAGG-----UAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 21602 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 24680 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 116849 0.77 0.311458
Target:  5'- -cCCACGCUCucGUCCUCCA-CCACa -3'
miRNA:   3'- aaGGUGCGGGuuCAGGAGGUaGGUGc -5'
28779 5' -56.9 NC_006146.1 + 14011 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 23245 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 97478 0.71 0.615382
Target:  5'- gUUCUacaACGCCCGGGgggaCCUCaaCAUCCGCGa -3'
miRNA:   3'- -AAGG---UGCGGGUUCa---GGAG--GUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 29401 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 20167 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 12367 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 123010 0.72 0.554887
Target:  5'- cUCCagagagagGCGCCCAAGgaaC-CCGUCCACGg -3'
miRNA:   3'- aAGG--------UGCGGGUUCag-GaGGUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 15446 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 17089 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 4799 0.72 0.564875
Target:  5'- uUUCUGCGCCCGGGgcgCCUCaaccgAUCCAUGc -3'
miRNA:   3'- -AAGGUGCGGGUUCa--GGAGg----UAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 55741 0.71 0.62555
Target:  5'- --aCACGCCCAAGaUCUCCA-CCGCc -3'
miRNA:   3'- aagGUGCGGGUUCaGGAGGUaGGUGc -5'
28779 5' -56.9 NC_006146.1 + 18524 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 27758 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.