miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 3' -62.5 NC_006146.1 + 136271 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 136457 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 137200 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 136550 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 74732 0.67 0.545096
Target:  5'- aAGGCCCUggagggacCCAGUgagccagcCUCCGGGggGCCAAg -3'
miRNA:   3'- gUCCGGGA--------GGUCA--------GGGGCCUa-CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 135156 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 137572 0.67 0.535496
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucgggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG-----------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 101265 0.67 0.564455
Target:  5'- gCGGGCCCauuagccgcccCCAGUaCCCCGGGgacguggGCCu- -3'
miRNA:   3'- -GUCCGGGa----------GGUCA-GGGGCCUa------CGGuu -5'
28780 3' -62.5 NC_006146.1 + 68032 0.67 0.55475
Target:  5'- gGGGCCCggccacgaCCAGguggcggcugCCCUGGcUGCCAAc -3'
miRNA:   3'- gUCCGGGa-------GGUCa---------GGGGCCuACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 139443 0.67 0.525957
Target:  5'- aAGGCCCcCaCGGUgCCCGGGggggUGCCu- -3'
miRNA:   3'- gUCCGGGaG-GUCAgGGGCCU----ACGGuu -5'
28780 3' -62.5 NC_006146.1 + 123288 0.67 0.525957
Target:  5'- -uGGCCCUaUCGGcgaUCCCUGGcgGCCGc -3'
miRNA:   3'- guCCGGGA-GGUC---AGGGGCCuaCGGUu -5'
28780 3' -62.5 NC_006146.1 + 168517 0.67 0.525957
Target:  5'- aCAGaGCCCUCUGGaagCCCgCGGAcGCCu- -3'
miRNA:   3'- -GUC-CGGGAGGUCa--GGG-GCCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 136921 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 135899 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 136364 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 137386 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 137014 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 135621 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 135528 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 135806 0.67 0.545096
Target:  5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3'
miRNA:   3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.