miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 3' -62.5 NC_006146.1 + 86196 0.71 0.331255
Target:  5'- ---cUCCUCCAGUCCCuCGGA-GCCAGa -3'
miRNA:   3'- guccGGGAGGUCAGGG-GCCUaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 12360 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 15439 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 13601 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 16679 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 18517 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 48609 0.74 0.219687
Target:  5'- aGGGUgUUCCAGUCgUCGGGUGCCGu -3'
miRNA:   3'- gUCCGgGAGGUCAGgGGCCUACGGUu -5'
28780 3' -62.5 NC_006146.1 + 58390 0.72 0.277131
Target:  5'- cCAGGCCCUCCaccGGcCCCUGGAccGCUAu -3'
miRNA:   3'- -GUCCGGGAGG---UCaGGGGCCUa-CGGUu -5'
28780 3' -62.5 NC_006146.1 + 57331 0.71 0.331255
Target:  5'- -uGGCUCUCUGGgggcggggCCCCGGGUGUCGGu -3'
miRNA:   3'- guCCGGGAGGUCa-------GGGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 168172 0.71 0.353466
Target:  5'- ---uCCCgcggCCAGUCCCUGGAUGUCGGg -3'
miRNA:   3'- guccGGGa---GGUCAGGGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 137697 0.66 0.63328
Target:  5'- -cGGCucccCCUCCGGccUCCCCccgGGGUGCCc- -3'
miRNA:   3'- guCCG----GGAGGUC--AGGGG---CCUACGGuu -5'
28780 3' -62.5 NC_006146.1 + 24673 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 21595 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 22835 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 28990 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 27751 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 167240 0.71 0.353466
Target:  5'- ---uCCCgcggCCAGUCCCUGGAUGUCGGg -3'
miRNA:   3'- guccGGGa---GGUCAGGGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 169104 0.71 0.353466
Target:  5'- ---uCCCgcggCCAGUCCCUGGAUGUCGGg -3'
miRNA:   3'- guccGGGa---GGUCAGGGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 2759 0.72 0.270884
Target:  5'- -cGGCCCUCgCAGgcccaagCCCGGAUGUCAGg -3'
miRNA:   3'- guCCGGGAG-GUCag-----GGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 19757 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.