miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 3' -62.5 NC_006146.1 + 1154 0.66 0.593809
Target:  5'- aGGGUCC-CCGGgccgCCCCGGGgcucccccgcGCCGAu -3'
miRNA:   3'- gUCCGGGaGGUCa---GGGGCCUa---------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 2086 0.66 0.593809
Target:  5'- aGGGUCC-CCGGgccgCCCCGGGgcucccccgcGCCGAu -3'
miRNA:   3'- gUCCGGGaGGUCa---GGGGCCUa---------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 2759 0.72 0.270884
Target:  5'- -cGGCCCUCgCAGgcccaagCCCGGAUGUCAGg -3'
miRNA:   3'- guCCGGGAG-GUCag-----GGGCCUACGGUU- -5'
28780 3' -62.5 NC_006146.1 + 3018 0.66 0.593809
Target:  5'- aGGGUCC-CCGGgccgCCCCGGGgcucccccgcGCCGAu -3'
miRNA:   3'- gUCCGGGaGGUCa---GGGGCCUa---------CGGUU- -5'
28780 3' -62.5 NC_006146.1 + 3745 0.68 0.51083
Target:  5'- -uGGCCCUUCAG-CCCgGGGuggguccccuagaccUGCCAc -3'
miRNA:   3'- guCCGGGAGGUCaGGGgCCU---------------ACGGUu -5'
28780 3' -62.5 NC_006146.1 + 10146 0.67 0.55475
Target:  5'- uCAGGCCCugucugaaaugaUCCAGUUuuaCCUGGAggaaguaaUGCCAc -3'
miRNA:   3'- -GUCCGGG------------AGGUCAG---GGGCCU--------ACGGUu -5'
28780 3' -62.5 NC_006146.1 + 12360 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 13601 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 13841 0.68 0.479318
Target:  5'- uCAGGCCggCCGGagggaCCCCGGcgGCCc- -3'
miRNA:   3'- -GUCCGGgaGGUCa----GGGGCCuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 14057 0.7 0.384682
Target:  5'- cCAGGCCCUCC-GUCCUCccugGCCAc -3'
miRNA:   3'- -GUCCGGGAGGuCAGGGGccuaCGGUu -5'
28780 3' -62.5 NC_006146.1 + 14881 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 15310 0.68 0.507077
Target:  5'- gGGGCCggaggCCAG-CCCCGGuGUGCCc- -3'
miRNA:   3'- gUCCGGga---GGUCaGGGGCC-UACGGuu -5'
28780 3' -62.5 NC_006146.1 + 15439 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 16679 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 16919 0.68 0.479318
Target:  5'- uCAGGCCggCCGGagggaCCCCGGcgGCCc- -3'
miRNA:   3'- -GUCCGGgaGGUCa----GGGGCCuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 17135 0.7 0.384682
Target:  5'- cCAGGCCCUCC-GUCCUCccugGCCAc -3'
miRNA:   3'- -GUCCGGGAGGuCAGGGGccuaCGGUu -5'
28780 3' -62.5 NC_006146.1 + 18517 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 19757 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 19996 0.68 0.479318
Target:  5'- uCAGGCCggCCGGagggaCCCCGGcgGCCc- -3'
miRNA:   3'- -GUCCGGgaGGUCa----GGGGCCuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 20213 0.7 0.384682
Target:  5'- cCAGGCCCUCC-GUCCUCccugGCCAc -3'
miRNA:   3'- -GUCCGGGAGGuCAGGGGccuaCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.