Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28780 | 3' | -62.5 | NC_006146.1 | + | 101265 | 0.67 | 0.564455 |
Target: 5'- gCGGGCCCauuagccgcccCCAGUaCCCCGGGgacguggGCCu- -3' miRNA: 3'- -GUCCGGGa----------GGUCA-GGGGCCUa------CGGuu -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 46620 | 0.67 | 0.564455 |
Target: 5'- cCAGGUCUUCCAucagggCCuuGGggGCCGAg -3' miRNA: 3'- -GUCCGGGAGGUca----GGggCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 93609 | 0.67 | 0.564455 |
Target: 5'- cCGGGCUC-CUGGggcugcuguccUCCCCGGAgGCCGAa -3' miRNA: 3'- -GUCCGGGaGGUC-----------AGGGGCCUaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 68032 | 0.67 | 0.55475 |
Target: 5'- gGGGCCCggccacgaCCAGguggcggcugCCCUGGcUGCCAAc -3' miRNA: 3'- gUCCGGGa-------GGUCa---------GGGGCCuACGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 10146 | 0.67 | 0.55475 |
Target: 5'- uCAGGCCCugucugaaaugaUCCAGUUuuaCCUGGAggaaguaaUGCCAc -3' miRNA: 3'- -GUCCGGG------------AGGUCAG---GGGCCU--------ACGGUu -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135899 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135435 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 136735 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 136085 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 136178 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135992 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135806 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 137386 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135342 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 136550 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135621 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135528 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 135156 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 136828 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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28780 | 3' | -62.5 | NC_006146.1 | + | 137479 | 0.67 | 0.545096 |
Target: 5'- cCGGGUCCgcugcCCGGUCCuggagcucggggCCGGggGCCGGg -3' miRNA: 3'- -GUCCGGGa----GGUCAGG------------GGCCuaCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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