miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 5' -57.8 NC_006146.1 + 42211 0.66 0.861531
Target:  5'- uGGUgAACuCGuGUCUGcGAGGCgCCCg -3'
miRNA:   3'- -CCAgUUGuGCcUAGAC-CUCCGgGGGa -5'
28780 5' -57.8 NC_006146.1 + 47245 0.66 0.882933
Target:  5'- ---uGGCGCGGGUCgacGuGGCCCCUg -3'
miRNA:   3'- ccagUUGUGCCUAGac-CuCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 48238 0.66 0.868869
Target:  5'- gGGUgAGCGCcGcgC-GGAgGGCCCCCg -3'
miRNA:   3'- -CCAgUUGUGcCuaGaCCU-CCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 49516 0.67 0.821998
Target:  5'- uGGaUCGGCGgGuGAUCcGGGGGCUCCUc -3'
miRNA:   3'- -CC-AGUUGUgC-CUAGaCCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 52980 0.68 0.787373
Target:  5'- cGGggCGGgGCGGGcgUCUcGAGGCCCCUc -3'
miRNA:   3'- -CCa-GUUgUGCCU--AGAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 56793 0.74 0.462799
Target:  5'- cGGUgAGCGCGGcggccGUCUGGcgggcggggcuucuGGCCCCCg -3'
miRNA:   3'- -CCAgUUGUGCC-----UAGACCu-------------CCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 56867 0.71 0.583162
Target:  5'- -uUUGGCugGGG-CUGGcGGCCCCCg -3'
miRNA:   3'- ccAGUUGugCCUaGACCuCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 61490 0.66 0.882933
Target:  5'- aGGaUCAcCAgGGcUCcgaGGAGGCCCCUg -3'
miRNA:   3'- -CC-AGUuGUgCCuAGa--CCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 62286 0.68 0.784684
Target:  5'- gGGUCAGCugGGAaaguugUUGGGugaaagcuaucuccGGCuCCCCg -3'
miRNA:   3'- -CCAGUUGugCCUa-----GACCU--------------CCG-GGGGa -5'
28780 5' -57.8 NC_006146.1 + 73411 0.66 0.853995
Target:  5'- aGGUC---GCGGAUgUuGAGGUCCCCc -3'
miRNA:   3'- -CCAGuugUGCCUAgAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 75398 0.67 0.830262
Target:  5'- --aCAGCuccCGGAUaUGGAGGCCUUCUc -3'
miRNA:   3'- ccaGUUGu--GCCUAgACCUCCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 90976 0.66 0.861531
Target:  5'- gGGUCAGguCaGGGUUucgGGAaGCCCCCg -3'
miRNA:   3'- -CCAGUUguG-CCUAGa--CCUcCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 100894 0.68 0.76923
Target:  5'- uGUCGGCcUGGGUCUcGGccgugGGGUCCCCg -3'
miRNA:   3'- cCAGUUGuGCCUAGA-CC-----UCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 104000 0.68 0.772898
Target:  5'- cGGUCuGCAaccugguccUGGAUCUGGAucucaagacccggggGGCgCCCUg -3'
miRNA:   3'- -CCAGuUGU---------GCCUAGACCU---------------CCGgGGGA- -5'
28780 5' -57.8 NC_006146.1 + 105664 0.69 0.715196
Target:  5'- cGUCGuuCACGGGaagcgaggucaccUCUGGAcgcccgggcucccagGGCCCCCa -3'
miRNA:   3'- cCAGUu-GUGCCU-------------AGACCU---------------CCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 106175 0.67 0.8278
Target:  5'- aGUCAuccccggccugcugACACGGGUCcc-GGGCCUCCUg -3'
miRNA:   3'- cCAGU--------------UGUGCCUAGaccUCCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 109282 0.67 0.830262
Target:  5'- aGGUCGuaGCugGGAg--GGAucucGGCCCCg- -3'
miRNA:   3'- -CCAGU--UGugCCUagaCCU----CCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 114614 0.7 0.682807
Target:  5'- -cUCGAgGCGGcgCUGGAcguccuGGCCUCCUc -3'
miRNA:   3'- ccAGUUgUGCCuaGACCU------CCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 115364 0.72 0.563416
Target:  5'- uGGcCGGCguggcgGCGGAgCUGGAGGCCCUg- -3'
miRNA:   3'- -CCaGUUG------UGCCUaGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 115771 0.73 0.477427
Target:  5'- gGGUCccgauaAACAUGGAggUGGAGGCCCUg- -3'
miRNA:   3'- -CCAG------UUGUGCCUagACCUCCGGGGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.