miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 5' -57.8 NC_006146.1 + 3709 0.68 0.76923
Target:  5'- uGGUCAgacacacagACAgGGucUCUGGGGGCCgcguggCCCUu -3'
miRNA:   3'- -CCAGU---------UGUgCCu-AGACCUCCGG------GGGA- -5'
28780 5' -57.8 NC_006146.1 + 12891 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 12916 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 13690 0.66 0.853995
Target:  5'- -aUCAGgGCGGGcCUGGAGGCCa--- -3'
miRNA:   3'- ccAGUUgUGCCUaGACCUCCGGggga -5'
28780 5' -57.8 NC_006146.1 + 14074 0.74 0.414407
Target:  5'- cGGUCcuCcCGGGUCUGGAGGUcuagaguCCCCa -3'
miRNA:   3'- -CCAGuuGuGCCUAGACCUCCG-------GGGGa -5'
28780 5' -57.8 NC_006146.1 + 14521 0.68 0.787373
Target:  5'- --aCAGCAUGGggCUGGAGaGCCuggaccgggCCCUg -3'
miRNA:   3'- ccaGUUGUGCCuaGACCUC-CGG---------GGGA- -5'
28780 5' -57.8 NC_006146.1 + 15968 0.68 0.75062
Target:  5'- cGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 15993 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 18982 0.67 0.804984
Target:  5'- aGGgCGGCAgggcCGGAgCcagaccccagUGGGGGCCCCCUc -3'
miRNA:   3'- -CCaGUUGU----GCCUaG----------ACCUCCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 19046 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 19071 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 19976 0.67 0.838354
Target:  5'- cGUCu--GCGaGGUCaGGAGGCCCCa- -3'
miRNA:   3'- cCAGuugUGC-CUAGaCCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 22124 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 22149 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 25202 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 25227 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 28280 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 28305 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 34066 0.71 0.623003
Target:  5'- gGGUCccguGGCACGGggCcGGGGGUCCCg- -3'
miRNA:   3'- -CCAG----UUGUGCCuaGaCCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 40346 0.66 0.875301
Target:  5'- uGGUaGGCGuggGGAUCUGcGgcggagaAGGCCCCCUg -3'
miRNA:   3'- -CCAgUUGUg--CCUAGAC-C-------UCCGGGGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.