miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 5' -57.8 NC_006146.1 + 56793 0.74 0.462799
Target:  5'- cGGUgAGCGCGGcggccGUCUGGcgggcggggcuucuGGCCCCCg -3'
miRNA:   3'- -CCAgUUGUGCC-----UAGACCu-------------CCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 19046 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 25202 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 126798 0.66 0.882933
Target:  5'- cGGgCAGC-CGGGgcCUGGAGGUUUCCg -3'
miRNA:   3'- -CCaGUUGuGCCUa-GACCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 34066 0.71 0.623003
Target:  5'- gGGUCccguGGCACGGggCcGGGGGUCCCg- -3'
miRNA:   3'- -CCAG----UUGUGCCuaGaCCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 12916 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 19071 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 22149 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 151884 0.69 0.712277
Target:  5'- uGUCGuagACGUGGAacUCgaGGGGGCCCCCa -3'
miRNA:   3'- cCAGU---UGUGCCU--AGa-CCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 12891 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 152015 0.68 0.759979
Target:  5'- cGGUagaAGCACagugGGggCU-GAGGCCCCCg -3'
miRNA:   3'- -CCAg--UUGUG----CCuaGAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 28305 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 115771 0.73 0.477427
Target:  5'- gGGUCccgauaAACAUGGAggUGGAGGCCCUg- -3'
miRNA:   3'- -CCAG------UUGUGCCUagACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 3709 0.68 0.76923
Target:  5'- uGGUCAgacacacagACAgGGucUCUGGGGGCCgcguggCCCUu -3'
miRNA:   3'- -CCAGU---------UGUgCCu-AGACCUCCGG------GGGA- -5'
28780 5' -57.8 NC_006146.1 + 56867 0.71 0.583162
Target:  5'- -uUUGGCugGGG-CUGGcGGCCCCCg -3'
miRNA:   3'- ccAGUUGugCCUaGACCuCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 25227 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 100894 0.68 0.76923
Target:  5'- uGUCGGCcUGGGUCUcGGccgugGGGUCCCCg -3'
miRNA:   3'- cCAGUUGuGCCUAGA-CC-----UCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 22124 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 139123 0.71 0.593088
Target:  5'- uGUCAAUugGGggCUgugggccgaacGGGGGCUCCCg -3'
miRNA:   3'- cCAGUUGugCCuaGA-----------CCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 15993 0.7 0.652977
Target:  5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3'
miRNA:   3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.