Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28780 | 5' | -57.8 | NC_006146.1 | + | 122732 | 1.05 | 0.004366 |
Target: 5'- cGGUCAACACGGAUCUGGAGGCCCCUa -3' miRNA: 3'- -CCAGUUGUGCCUAGACCUCCGGGGGa -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 127115 | 0.78 | 0.26775 |
Target: 5'- gGGUCGACGCccGGAgacCUGGuGGUCCCCUc -3' miRNA: 3'- -CCAGUUGUG--CCUa--GACCuCCGGGGGA- -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 14074 | 0.74 | 0.414407 |
Target: 5'- cGGUCcuCcCGGGUCUGGAGGUcuagaguCCCCa -3' miRNA: 3'- -CCAGuuGuGCCUAGACCUCCG-------GGGGa -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 124443 | 0.74 | 0.44485 |
Target: 5'- uGGUCGGCACGcauccGGccuacgccgccgccuUcCUGGGGGCCCCCUc -3' miRNA: 3'- -CCAGUUGUGC-----CU---------------A-GACCUCCGGGGGA- -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 56793 | 0.74 | 0.462799 |
Target: 5'- cGGUgAGCGCGGcggccGUCUGGcgggcggggcuucuGGCCCCCg -3' miRNA: 3'- -CCAgUUGUGCC-----UAGACCu-------------CCGGGGGa -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 115771 | 0.73 | 0.477427 |
Target: 5'- gGGUCccgauaAACAUGGAggUGGAGGCCCUg- -3' miRNA: 3'- -CCAG------UUGUGCCUagACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 166613 | 0.72 | 0.543853 |
Target: 5'- cGUCu-CACGGAgaguaGGAGGCUCCCUg -3' miRNA: 3'- cCAGuuGUGCCUaga--CCUCCGGGGGA- -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 115364 | 0.72 | 0.563416 |
Target: 5'- uGGcCGGCguggcgGCGGAgCUGGAGGCCCUg- -3' miRNA: 3'- -CCaGUUG------UGCCUaGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 56867 | 0.71 | 0.583162 |
Target: 5'- -uUUGGCugGGG-CUGGcGGCCCCCg -3' miRNA: 3'- ccAGUUGugCCUaGACCuCCGGGGGa -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 139123 | 0.71 | 0.593088 |
Target: 5'- uGUCAAUugGGggCUgugggccgaacGGGGGCUCCCg -3' miRNA: 3'- cCAGUUGugCCuaGA-----------CCUCCGGGGGa -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 34066 | 0.71 | 0.623003 |
Target: 5'- gGGUCccguGGCACGGggCcGGGGGUCCCg- -3' miRNA: 3'- -CCAG----UUGUGCCuaGaCCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 25227 | 0.7 | 0.652977 |
Target: 5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3' miRNA: 3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 12916 | 0.7 | 0.652977 |
Target: 5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3' miRNA: 3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 28305 | 0.7 | 0.652977 |
Target: 5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3' miRNA: 3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 22149 | 0.7 | 0.652977 |
Target: 5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3' miRNA: 3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 15993 | 0.7 | 0.652977 |
Target: 5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3' miRNA: 3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 19071 | 0.7 | 0.652977 |
Target: 5'- uGGUgAGCcUGGugccUCUGGAGGCCCUg- -3' miRNA: 3'- -CCAgUUGuGCCu---AGACCUCCGGGGga -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 114614 | 0.7 | 0.682807 |
Target: 5'- -cUCGAgGCGGcgCUGGAcguccuGGCCUCCUc -3' miRNA: 3'- ccAGUUgUGCCuaGACCU------CCGGGGGA- -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 151884 | 0.69 | 0.712277 |
Target: 5'- uGUCGuagACGUGGAacUCgaGGGGGCCCCCa -3' miRNA: 3'- cCAGU---UGUGCCU--AGa-CCUCCGGGGGa -5' |
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28780 | 5' | -57.8 | NC_006146.1 | + | 105664 | 0.69 | 0.715196 |
Target: 5'- cGUCGuuCACGGGaagcgaggucaccUCUGGAcgcccgggcucccagGGCCCCCa -3' miRNA: 3'- cCAGUu-GUGCCU-------------AGACCU---------------CCGGGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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