miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 5' -57.8 NC_006146.1 + 150462 0.67 0.804117
Target:  5'- ---gGACAgGGG-CUGGAugacaguGGCCCCCUg -3'
miRNA:   3'- ccagUUGUgCCUaGACCU-------CCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 25202 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 12891 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 126798 0.66 0.882933
Target:  5'- cGGgCAGC-CGGGgcCUGGAGGUUUCCg -3'
miRNA:   3'- -CCaGUUGuGCCUa-GACCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 137793 0.67 0.830262
Target:  5'- uGGUCcGC-CGGAUCcgcuucGGGGGUCCgCCg -3'
miRNA:   3'- -CCAGuUGuGCCUAGa-----CCUCCGGG-GGa -5'
28780 5' -57.8 NC_006146.1 + 130960 0.68 0.787373
Target:  5'- uGUCAuCA-GGGUCaGGAGGCgCCCa -3'
miRNA:   3'- cCAGUuGUgCCUAGaCCUCCGgGGGa -5'
28780 5' -57.8 NC_006146.1 + 100894 0.68 0.76923
Target:  5'- uGUCGGCcUGGGUCUcGGccgugGGGUCCCCg -3'
miRNA:   3'- cCAGUUGuGCCUAGA-CC-----UCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 109282 0.67 0.830262
Target:  5'- aGGUCGuaGCugGGAg--GGAucucGGCCCCg- -3'
miRNA:   3'- -CCAGU--UGugCCUagaCCU----CCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 3709 0.68 0.76923
Target:  5'- uGGUCAgacacacagACAgGGucUCUGGGGGCCgcguggCCCUu -3'
miRNA:   3'- -CCAGU---------UGUgCCu-AGACCUCCGG------GGGA- -5'
28780 5' -57.8 NC_006146.1 + 52980 0.68 0.787373
Target:  5'- cGGggCGGgGCGGGcgUCUcGAGGCCCCUc -3'
miRNA:   3'- -CCa-GUUgUGCCU--AGAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 49516 0.67 0.821998
Target:  5'- uGGaUCGGCGgGuGAUCcGGGGGCUCCUc -3'
miRNA:   3'- -CC-AGUUGUgC-CUAGaCCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 42211 0.66 0.861531
Target:  5'- uGGUgAACuCGuGUCUGcGAGGCgCCCg -3'
miRNA:   3'- -CCAgUUGuGCcUAGAC-CUCCGgGGGa -5'
28780 5' -57.8 NC_006146.1 + 129945 0.68 0.778364
Target:  5'- cGGUCuacGGCACGGAcCUGGgguGGGUCCUg- -3'
miRNA:   3'- -CCAG---UUGUGCCUaGACC---UCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 28280 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 22124 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 19046 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 162956 0.66 0.876005
Target:  5'- cGUUGGCAuCGGAgUUGGcGGGCgCCCCUu -3'
miRNA:   3'- cCAGUUGU-GCCUaGACC-UCCG-GGGGA- -5'
28780 5' -57.8 NC_006146.1 + 152015 0.68 0.759979
Target:  5'- cGGUagaAGCACagugGGggCU-GAGGCCCCCg -3'
miRNA:   3'- -CCAg--UUGUG----CCuaGAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 154228 0.69 0.731613
Target:  5'- gGGUCugGACugGaGGgccCUgGGAGGCCCCUg -3'
miRNA:   3'- -CCAG--UUGugC-CUa--GA-CCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 157306 0.69 0.731613
Target:  5'- gGGUCugGACugGaGGgccCUgGGAGGCCCCUg -3'
miRNA:   3'- -CCAG--UUGugC-CUa--GA-CCUCCGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.