Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 2022 | 0.66 | 0.924764 |
Target: 5'- gGGCGGCaacGAugACCCUa--GGCCUCa -3' miRNA: 3'- -CUGCUGac-CUugUGGGAagaCCGGAG- -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 1715 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 784 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 219 | 0.75 | 0.473493 |
Target: 5'- cGCGACgguccccGGGGCGCCC--CUGGCCUCc -3' miRNA: 3'- cUGCUGa------CCUUGUGGGaaGACCGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home