Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 151156 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 148078 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 141922 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 80328 | 0.67 | 0.894641 |
Target: 5'- uGGCGACUGGGGCcuucuCCCg---GGUCUUc -3' miRNA: 3'- -CUGCUGACCUUGu----GGGaagaCCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 106272 | 0.67 | 0.873783 |
Target: 5'- -cCGGC-GGAagACAUCCUcCUGGCCUg -3' miRNA: 3'- cuGCUGaCCU--UGUGGGAaGACCGGAg -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 108574 | 0.67 | 0.873783 |
Target: 5'- -uUGGCUGGcGGCGgCgUcUCUGGCCUCg -3' miRNA: 3'- cuGCUGACC-UUGUgGgA-AGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 9462 | 0.68 | 0.850972 |
Target: 5'- gGugGGCgcgGGGuccGCGCCC-UCUGGCaUCa -3' miRNA: 3'- -CugCUGa--CCU---UGUGGGaAGACCGgAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 24539 | 0.69 | 0.817803 |
Target: 5'- --aGGCUcGGuuucGCGCUCUUCUGGCCg- -3' miRNA: 3'- cugCUGA-CCu---UGUGGGAAGACCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 145000 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 118055 | 0.66 | 0.929553 |
Target: 5'- aGGCGuaGCUGGAGgGCCCcaugaUCUGguugucaGCCUCu -3' miRNA: 3'- -CUGC--UGACCUUgUGGGa----AGAC-------CGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 10736 | 0.67 | 0.901137 |
Target: 5'- aGugGGgaGGGcACACgCCagCUGGCCUUa -3' miRNA: 3'- -CugCUgaCCU-UGUG-GGaaGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 155577 | 0.67 | 0.887913 |
Target: 5'- gGGCGcccGCcaGGGGCACaCCggggCUGGCCUCc -3' miRNA: 3'- -CUGC---UGa-CCUUGUG-GGaa--GACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 90861 | 0.67 | 0.863371 |
Target: 5'- gGACGGCUGccauuuggcuauGCACCCgagcCUGGcCCUCa -3' miRNA: 3'- -CUGCUGACcu----------UGUGGGaa--GACC-GGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 55697 | 0.68 | 0.850972 |
Target: 5'- cACGGCcgccgccggGGGGCucuGCCCgccgCUGGCCUCc -3' miRNA: 3'- cUGCUGa--------CCUUG---UGGGaa--GACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 68773 | 0.68 | 0.842149 |
Target: 5'- aGGCGGugcgcucugucauCUGGAACACCaugaucucUCUGGCCg- -3' miRNA: 3'- -CUGCU-------------GACCUUGUGGga------AGACCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 42480 | 0.68 | 0.834757 |
Target: 5'- uGCGGCccGGAuCACCCUcccCUGGCCg- -3' miRNA: 3'- cUGCUGa-CCUuGUGGGAa--GACCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 159619 | 0.68 | 0.826369 |
Target: 5'- uGGCGcuGCUGGGGCACgCCUUCcgGGaacaCCUCc -3' miRNA: 3'- -CUGC--UGACCUUGUG-GGAAGa-CC----GGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 148944 | 0.69 | 0.781928 |
Target: 5'- -uCGGCUGGAAUcuuugccucccuACCCcgcuaggggUUUUGGCCUCu -3' miRNA: 3'- cuGCUGACCUUG------------UGGG---------AAGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 117873 | 0.7 | 0.753573 |
Target: 5'- aGCGGCUGaGAuggGCACCCgaggCUGGUCaUCg -3' miRNA: 3'- cUGCUGAC-CU---UGUGGGaa--GACCGG-AG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 105091 | 0.7 | 0.743894 |
Target: 5'- aGCGcCUGGcGCAgCUCgucUCUGGCCUCg -3' miRNA: 3'- cUGCuGACCuUGU-GGGa--AGACCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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