Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 2647 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 3579 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 106272 | 0.67 | 0.873783 |
Target: 5'- -cCGGC-GGAagACAUCCUcCUGGCCUg -3' miRNA: 3'- cuGCUGaCCU--UGUGGGAaGACCGGAg -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 161754 | 0.66 | 0.9074 |
Target: 5'- uGGCGGCUgagguccgagGGGGCGCCUgggCgggGGCCUg -3' miRNA: 3'- -CUGCUGA----------CCUUGUGGGaa-Ga--CCGGAg -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 141093 | 0.66 | 0.9074 |
Target: 5'- -cUGGCUGGauaaGugGCCCUUgUGGCUUg -3' miRNA: 3'- cuGCUGACC----UugUGGGAAgACCGGAg -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 157312 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 154234 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 151156 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 148078 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 145000 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 141922 | 0.67 | 0.901137 |
Target: 5'- --gGACUGGAGgGCCCUgggaGGCCc- -3' miRNA: 3'- cugCUGACCUUgUGGGAaga-CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 80328 | 0.67 | 0.894641 |
Target: 5'- uGGCGACUGGGGCcuucuCCCg---GGUCUUc -3' miRNA: 3'- -CUGCUGACCUUGu----GGGaagaCCGGAG- -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 15881 | 0.66 | 0.935141 |
Target: 5'- aGCGuGCcGGAGgGCUCg-CUGGCCUCg -3' miRNA: 3'- cUGC-UGaCCUUgUGGGaaGACCGGAG- -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 108574 | 0.67 | 0.873783 |
Target: 5'- -uUGGCUGGcGGCGgCgUcUCUGGCCUCg -3' miRNA: 3'- cuGCUGACC-UUGUgGgA-AGACCGGAG- -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 9462 | 0.68 | 0.850972 |
Target: 5'- gGugGGCgcgGGGuccGCGCCC-UCUGGCaUCa -3' miRNA: 3'- -CugCUGa--CCU---UGUGGGaAGACCGgAG- -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 52606 | 0.68 | 0.850972 |
Target: 5'- aGCGccauuuGCUGGAGCACuCCUUCUuccuggaccgGGCCg- -3' miRNA: 3'- cUGC------UGACCUUGUG-GGAAGA----------CCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 24539 | 0.69 | 0.817803 |
Target: 5'- --aGGCUcGGuuucGCGCUCUUCUGGCCg- -3' miRNA: 3'- cugCUGA-CCu---UGUGGGAAGACCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 39652 | 0.69 | 0.809068 |
Target: 5'- gGugGGCUGaGACugCCU--UGGCCUUg -3' miRNA: 3'- -CugCUGACcUUGugGGAagACCGGAG- -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 116584 | 0.69 | 0.791121 |
Target: 5'- cGACGGC-GGAAgGCCUgagcCUGGCCa- -3' miRNA: 3'- -CUGCUGaCCUUgUGGGaa--GACCGGag -5' |
|||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 64592 | 0.69 | 0.772599 |
Target: 5'- -gUGuCUGGAACugGCCCUUgaGGCCUg -3' miRNA: 3'- cuGCuGACCUUG--UGGGAAgaCCGGAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home