miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 3' -55.6 NC_006146.1 + 57997 0.71 0.704288
Target:  5'- gGACGAgCUGGAG-GCCCgggUCUcGGCCUUc -3'
miRNA:   3'- -CUGCU-GACCUUgUGGGa--AGA-CCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 128506 0.67 0.901137
Target:  5'- gGACGGCgucgGGGugGCCCUgg-GGCgcccCUCg -3'
miRNA:   3'- -CUGCUGa---CCUugUGGGAagaCCG----GAG- -5'
28781 3' -55.6 NC_006146.1 + 55697 0.68 0.850972
Target:  5'- cACGGCcgccgccggGGGGCucuGCCCgccgCUGGCCUCc -3'
miRNA:   3'- cUGCUGa--------CCUUG---UGGGaa--GACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 105091 0.7 0.743894
Target:  5'- aGCGcCUGGcGCAgCUCgucUCUGGCCUCg -3'
miRNA:   3'- cUGCuGACCuUGU-GGGa--AGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 155577 0.67 0.887913
Target:  5'- gGGCGcccGCcaGGGGCACaCCggggCUGGCCUCc -3'
miRNA:   3'- -CUGC---UGa-CCUUGUG-GGaa--GACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 42480 0.68 0.834757
Target:  5'- uGCGGCccGGAuCACCCUcccCUGGCCg- -3'
miRNA:   3'- cUGCUGa-CCUuGUGGGAa--GACCGGag -5'
28781 3' -55.6 NC_006146.1 + 2022 0.66 0.924764
Target:  5'- gGGCGGCaacGAugACCCUa--GGCCUCa -3'
miRNA:   3'- -CUGCUGac-CUugUGGGAagaCCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 113085 0.66 0.913427
Target:  5'- --aGGUUGGAGCACCC----GGCCUCg -3'
miRNA:   3'- cugCUGACCUUGUGGGaagaCCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 148944 0.69 0.781928
Target:  5'- -uCGGCUGGAAUcuuugccucccuACCCcgcuaggggUUUUGGCCUCu -3'
miRNA:   3'- cuGCUGACCUUG------------UGGG---------AAGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 159619 0.68 0.826369
Target:  5'- uGGCGcuGCUGGGGCACgCCUUCcgGGaacaCCUCc -3'
miRNA:   3'- -CUGC--UGACCUUGUG-GGAAGa-CC----GGAG- -5'
28781 3' -55.6 NC_006146.1 + 10736 0.67 0.901137
Target:  5'- aGugGGgaGGGcACACgCCagCUGGCCUUa -3'
miRNA:   3'- -CugCUgaCCU-UGUG-GGaaGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 117873 0.7 0.753573
Target:  5'- aGCGGCUGaGAuggGCACCCgaggCUGGUCaUCg -3'
miRNA:   3'- cUGCUGAC-CU---UGUGGGaa--GACCGG-AG- -5'
28781 3' -55.6 NC_006146.1 + 118055 0.66 0.929553
Target:  5'- aGGCGuaGCUGGAGgGCCCcaugaUCUGguugucaGCCUCu -3'
miRNA:   3'- -CUGC--UGACCUUgUGGGa----AGAC-------CGGAG- -5'
28781 3' -55.6 NC_006146.1 + 90861 0.67 0.863371
Target:  5'- gGACGGCUGccauuuggcuauGCACCCgagcCUGGcCCUCa -3'
miRNA:   3'- -CUGCUGACcu----------UGUGGGaa--GACC-GGAG- -5'
28781 3' -55.6 NC_006146.1 + 68773 0.68 0.842149
Target:  5'- aGGCGGugcgcucugucauCUGGAACACCaugaucucUCUGGCCg- -3'
miRNA:   3'- -CUGCU-------------GACCUUGUGGga------AGACCGGag -5'
28781 3' -55.6 NC_006146.1 + 106272 0.67 0.873783
Target:  5'- -cCGGC-GGAagACAUCCUcCUGGCCUg -3'
miRNA:   3'- cuGCUGaCCU--UGUGGGAaGACCGGAg -5'
28781 3' -55.6 NC_006146.1 + 9462 0.68 0.850972
Target:  5'- gGugGGCgcgGGGuccGCGCCC-UCUGGCaUCa -3'
miRNA:   3'- -CugCUGa--CCU---UGUGGGaAGACCGgAG- -5'
28781 3' -55.6 NC_006146.1 + 108574 0.67 0.873783
Target:  5'- -uUGGCUGGcGGCGgCgUcUCUGGCCUCg -3'
miRNA:   3'- cuGCUGACC-UUGUgGgA-AGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 151156 0.67 0.901137
Target:  5'- --gGACUGGAGgGCCCUgggaGGCCc- -3'
miRNA:   3'- cugCUGACCUUgUGGGAaga-CCGGag -5'
28781 3' -55.6 NC_006146.1 + 154234 0.67 0.901137
Target:  5'- --gGACUGGAGgGCCCUgggaGGCCc- -3'
miRNA:   3'- cugCUGACCUUgUGGGAaga-CCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.