Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 122301 | 1.09 | 0.003383 |
Target: 5'- cGACGACUGGAACACCCUUCUGGCCUCc -3' miRNA: 3'- -CUGCUGACCUUGUGGGAAGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 219 | 0.75 | 0.473493 |
Target: 5'- cGCGACgguccccGGGGCGCCC--CUGGCCUCc -3' miRNA: 3'- cUGCUGa------CCUUGUGGGaaGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 103257 | 0.72 | 0.6104 |
Target: 5'- gGACGAUagaugccuacagGGGGCGCCUUccaCUGGCCUCg -3' miRNA: 3'- -CUGCUGa-----------CCUUGUGGGAa--GACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 57997 | 0.71 | 0.704288 |
Target: 5'- gGACGAgCUGGAG-GCCCgggUCUcGGCCUUc -3' miRNA: 3'- -CUGCU-GACCUUgUGGGa--AGA-CCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 3579 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 2647 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 784 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 1715 | 0.71 | 0.714304 |
Target: 5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3' miRNA: 3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 115503 | 0.71 | 0.714304 |
Target: 5'- gGGCGACU---ACGCCgUgaugCUGGCCUCg -3' miRNA: 3'- -CUGCUGAccuUGUGGgAa---GACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 78403 | 0.7 | 0.72425 |
Target: 5'- -cUGAUaGGAGCcgcuggGCCCUUCUGGaCCUCc -3' miRNA: 3'- cuGCUGaCCUUG------UGGGAAGACC-GGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 11914 | 0.7 | 0.734117 |
Target: 5'- cGCGG-UGGAGCACCUggUCUuugcGGCCUCc -3' miRNA: 3'- cUGCUgACCUUGUGGGa-AGA----CCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 105091 | 0.7 | 0.743894 |
Target: 5'- aGCGcCUGGcGCAgCUCgucUCUGGCCUCg -3' miRNA: 3'- cUGCuGACCuUGU-GGGa--AGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 117873 | 0.7 | 0.753573 |
Target: 5'- aGCGGCUGaGAuggGCACCCgaggCUGGUCaUCg -3' miRNA: 3'- cUGCUGAC-CU---UGUGGGaa--GACCGG-AG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 64592 | 0.69 | 0.772599 |
Target: 5'- -gUGuCUGGAACugGCCCUUgaGGCCUg -3' miRNA: 3'- cuGCuGACCUUG--UGGGAAgaCCGGAg -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 148944 | 0.69 | 0.781928 |
Target: 5'- -uCGGCUGGAAUcuuugccucccuACCCcgcuaggggUUUUGGCCUCu -3' miRNA: 3'- cuGCUGACCUUG------------UGGG---------AAGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 116584 | 0.69 | 0.791121 |
Target: 5'- cGACGGC-GGAAgGCCUgagcCUGGCCa- -3' miRNA: 3'- -CUGCUGaCCUUgUGGGaa--GACCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 39652 | 0.69 | 0.809068 |
Target: 5'- gGugGGCUGaGACugCCU--UGGCCUUg -3' miRNA: 3'- -CugCUGACcUUGugGGAagACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 60394 | 0.69 | 0.809068 |
Target: 5'- aGCGcCUGGAgaacaucuGCACCCUcCUGGaCCUg -3' miRNA: 3'- cUGCuGACCU--------UGUGGGAaGACC-GGAg -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 24539 | 0.69 | 0.817803 |
Target: 5'- --aGGCUcGGuuucGCGCUCUUCUGGCCg- -3' miRNA: 3'- cugCUGA-CCu---UGUGGGAAGACCGGag -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 159619 | 0.68 | 0.826369 |
Target: 5'- uGGCGcuGCUGGGGCACgCCUUCcgGGaacaCCUCc -3' miRNA: 3'- -CUGC--UGACCUUGUG-GGAAGa-CC----GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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