miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 3' -55.6 NC_006146.1 + 219 0.75 0.473493
Target:  5'- cGCGACgguccccGGGGCGCCC--CUGGCCUCc -3'
miRNA:   3'- cUGCUGa------CCUUGUGGGaaGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 784 0.71 0.714304
Target:  5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3'
miRNA:   3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5'
28781 3' -55.6 NC_006146.1 + 1715 0.71 0.714304
Target:  5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3'
miRNA:   3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5'
28781 3' -55.6 NC_006146.1 + 2022 0.66 0.924764
Target:  5'- gGGCGGCaacGAugACCCUa--GGCCUCa -3'
miRNA:   3'- -CUGCUGac-CUugUGGGAagaCCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 2647 0.71 0.714304
Target:  5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3'
miRNA:   3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5'
28781 3' -55.6 NC_006146.1 + 3579 0.71 0.714304
Target:  5'- uGACGAC-GGGACGCCCcgCcGGCCc- -3'
miRNA:   3'- -CUGCUGaCCUUGUGGGaaGaCCGGag -5'
28781 3' -55.6 NC_006146.1 + 9462 0.68 0.850972
Target:  5'- gGugGGCgcgGGGuccGCGCCC-UCUGGCaUCa -3'
miRNA:   3'- -CugCUGa--CCU---UGUGGGaAGACCGgAG- -5'
28781 3' -55.6 NC_006146.1 + 10736 0.67 0.901137
Target:  5'- aGugGGgaGGGcACACgCCagCUGGCCUUa -3'
miRNA:   3'- -CugCUgaCCU-UGUG-GGaaGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 11914 0.7 0.734117
Target:  5'- cGCGG-UGGAGCACCUggUCUuugcGGCCUCc -3'
miRNA:   3'- cUGCUgACCUUGUGGGa-AGA----CCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 15881 0.66 0.935141
Target:  5'- aGCGuGCcGGAGgGCUCg-CUGGCCUCg -3'
miRNA:   3'- cUGC-UGaCCUUgUGGGaaGACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 24539 0.69 0.817803
Target:  5'- --aGGCUcGGuuucGCGCUCUUCUGGCCg- -3'
miRNA:   3'- cugCUGA-CCu---UGUGGGAAGACCGGag -5'
28781 3' -55.6 NC_006146.1 + 39652 0.69 0.809068
Target:  5'- gGugGGCUGaGACugCCU--UGGCCUUg -3'
miRNA:   3'- -CugCUGACcUUGugGGAagACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 42480 0.68 0.834757
Target:  5'- uGCGGCccGGAuCACCCUcccCUGGCCg- -3'
miRNA:   3'- cUGCUGa-CCUuGUGGGAa--GACCGGag -5'
28781 3' -55.6 NC_006146.1 + 52606 0.68 0.850972
Target:  5'- aGCGccauuuGCUGGAGCACuCCUUCUuccuggaccgGGCCg- -3'
miRNA:   3'- cUGC------UGACCUUGUG-GGAAGA----------CCGGag -5'
28781 3' -55.6 NC_006146.1 + 55697 0.68 0.850972
Target:  5'- cACGGCcgccgccggGGGGCucuGCCCgccgCUGGCCUCc -3'
miRNA:   3'- cUGCUGa--------CCUUG---UGGGaa--GACCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 57997 0.71 0.704288
Target:  5'- gGACGAgCUGGAG-GCCCgggUCUcGGCCUUc -3'
miRNA:   3'- -CUGCU-GACCUUgUGGGa--AGA-CCGGAG- -5'
28781 3' -55.6 NC_006146.1 + 60394 0.69 0.809068
Target:  5'- aGCGcCUGGAgaacaucuGCACCCUcCUGGaCCUg -3'
miRNA:   3'- cUGCuGACCU--------UGUGGGAaGACC-GGAg -5'
28781 3' -55.6 NC_006146.1 + 64592 0.69 0.772599
Target:  5'- -gUGuCUGGAACugGCCCUUgaGGCCUg -3'
miRNA:   3'- cuGCuGACCUUG--UGGGAAgaCCGGAg -5'
28781 3' -55.6 NC_006146.1 + 68773 0.68 0.842149
Target:  5'- aGGCGGugcgcucugucauCUGGAACACCaugaucucUCUGGCCg- -3'
miRNA:   3'- -CUGCU-------------GACCUUGUGGga------AGACCGGag -5'
28781 3' -55.6 NC_006146.1 + 78403 0.7 0.72425
Target:  5'- -cUGAUaGGAGCcgcuggGCCCUUCUGGaCCUCc -3'
miRNA:   3'- cuGCUGaCCUUG------UGGGAAGACC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.