Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 18914 | 0.67 | 0.869725 |
Target: 5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3' miRNA: 3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 15836 | 0.67 | 0.869725 |
Target: 5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3' miRNA: 3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 12757 | 0.67 | 0.869725 |
Target: 5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3' miRNA: 3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 44516 | 0.67 | 0.897101 |
Target: 5'- -aGAGGCCCCuGGUGGgaUCCAuGG-Ca -3' miRNA: 3'- ggCUCCGGGGcCUACUa-AGGUuCCaG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 32879 | 0.67 | 0.87689 |
Target: 5'- gCGAGGuCCCUGccUGGcaCCAGGGUCc -3' miRNA: 3'- gGCUCC-GGGGCcuACUaaGGUUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 123173 | 0.67 | 0.883844 |
Target: 5'- -gGAGGCCCCGGAcGAcgagcUCCGGGc-- -3' miRNA: 3'- ggCUCCGGGGCCUaCUa----AGGUUCcag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 141577 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 144655 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 150810 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 153888 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 156966 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 147732 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 136575 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 136668 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 136760 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 136853 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 136946 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 137225 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 137318 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 135646 | 0.68 | 0.84701 |
Target: 5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3' miRNA: 3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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