Results 21 - 40 of 143 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 137218 | 0.66 | 0.909463 |
Target: 5'- cCCGGGGaggaagCCGGGUGGgggCCuGGGGUCc -3' miRNA: 3'- -GGCUCCgg----GGCCUACUaa-GG-UUCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 124934 | 0.66 | 0.909463 |
Target: 5'- gCGAGgagcuGCCCCGGGcagaGAgcgUCGAGGUCc -3' miRNA: 3'- gGCUC-----CGGGGCCUa---CUaa-GGUUCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 21991 | 0.67 | 0.869725 |
Target: 5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3' miRNA: 3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 118682 | 0.67 | 0.890582 |
Target: 5'- cCCGAGGCCuUCGaGAUGGaggacCCucGGGUCu -3' miRNA: 3'- -GGCUCCGG-GGC-CUACUaa---GGu-UCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 156966 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 10100 | 0.67 | 0.897101 |
Target: 5'- gUGAGGaCCCCGGucGAggCguGGGUCu -3' miRNA: 3'- gGCUCC-GGGGCCuaCUaaGguUCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 167657 | 0.67 | 0.890582 |
Target: 5'- gCCGGGGgCCCGGggGcgUgucccgcgacCCGAGGg- -3' miRNA: 3'- -GGCUCCgGGGCCuaCuaA----------GGUUCCag -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 147732 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 44816 | 0.67 | 0.883844 |
Target: 5'- uCUGAGGCCCCGcugcggcuGGUGA--CgGAGGUg -3' miRNA: 3'- -GGCUCCGGGGC--------CUACUaaGgUUCCAg -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 161269 | 0.67 | 0.883844 |
Target: 5'- gCCGcauGCgCCUGGggGAgaCCGAGGUCa -3' miRNA: 3'- -GGCuc-CG-GGGCCuaCUaaGGUUCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 144655 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 123173 | 0.67 | 0.883844 |
Target: 5'- -gGAGGCCCCGGAcGAcgagcUCCGGGc-- -3' miRNA: 3'- ggCUCCGGGGCCUaCUa----AGGUUCcag -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 141577 | 0.67 | 0.883844 |
Target: 5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3' miRNA: 3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 168130 | 0.67 | 0.890582 |
Target: 5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3' miRNA: 3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 47315 | 0.67 | 0.897101 |
Target: 5'- cCCG-GGCCuCCuGGAUGAUggccUCCAgccGGGcCa -3' miRNA: 3'- -GGCuCCGG-GG-CCUACUA----AGGU---UCCaG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 65210 | 0.67 | 0.903395 |
Target: 5'- -gGGGGCCCUGGGagcccggGcgUCCAgAGGUg -3' miRNA: 3'- ggCUCCGGGGCCUa------CuaAGGU-UCCAg -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 44516 | 0.67 | 0.897101 |
Target: 5'- -aGAGGCCCCuGGUGGgaUCCAuGG-Ca -3' miRNA: 3'- ggCUCCGGGGcCUACUa-AGGUuCCaG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 69850 | 0.67 | 0.902154 |
Target: 5'- cCCGuGGCCCUGGGaGGUcgggcguagaggCCcAGGUCc -3' miRNA: 3'- -GGCuCCGGGGCCUaCUAa-----------GGuUCCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 169062 | 0.67 | 0.890582 |
Target: 5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3' miRNA: 3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5' |
|||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 169994 | 0.67 | 0.890582 |
Target: 5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3' miRNA: 3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home