miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 155876 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 86319 0.66 0.926291
Target:  5'- -gGAGGCCCUGGG------CAGGGUCu -3'
miRNA:   3'- ggCUCCGGGGCCUacuaagGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 106759 0.66 0.931438
Target:  5'- uCCGAGGCCCUGacUGAaUUCAAGa-- -3'
miRNA:   3'- -GGCUCCGGGGCcuACUaAGGUUCcag -5'
28781 5' -56.2 NC_006146.1 + 99384 0.66 0.936353
Target:  5'- uUGAGGCCCaGGAgcGAgucggCCAGGGg- -3'
miRNA:   3'- gGCUCCGGGgCCUa-CUaa---GGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 146642 0.66 0.915303
Target:  5'- aCGAGGCCUgGG-----UCCAuGGUCa -3'
miRNA:   3'- gGCUCCGGGgCCuacuaAGGUuCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137983 0.66 0.915303
Target:  5'- cCCGGGGgCCCGGcgGggUggGGGGUg -3'
miRNA:   3'- -GGCUCCgGGGCCuaCuaAggUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 108500 0.66 0.917574
Target:  5'- cCCGGGGUUCCGGAgucGAUaaccuuaccccaggCCGAGGcCc -3'
miRNA:   3'- -GGCUCCGGGGCCUa--CUAa-------------GGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 4577 0.66 0.920913
Target:  5'- aCCGA-GCaCCCGGGccUGGUuUuuGAGGUCg -3'
miRNA:   3'- -GGCUcCG-GGGCCU--ACUA-AggUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 129636 0.66 0.924168
Target:  5'- cCUGAcGCCCCGGucggcuccgUCUggGGUCu -3'
miRNA:   3'- -GGCUcCGGGGCCuacua----AGGuuCCAG- -5'
28781 5' -56.2 NC_006146.1 + 65089 0.66 0.909463
Target:  5'- gCCGGGGaCCCCuGGGUGuucuUUCCcgucuGGGa- -3'
miRNA:   3'- -GGCUCC-GGGG-CCUACu---AAGGu----UCCag -5'
28781 5' -56.2 NC_006146.1 + 124934 0.66 0.909463
Target:  5'- gCGAGgagcuGCCCCGGGcagaGAgcgUCGAGGUCc -3'
miRNA:   3'- gGCUC-----CGGGGCCUa---CUaa-GGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137218 0.66 0.909463
Target:  5'- cCCGGGGaggaagCCGGGUGGgggCCuGGGGUCc -3'
miRNA:   3'- -GGCUCCgg----GGCCUACUaa-GG-UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 154670 0.66 0.931438
Target:  5'- gCCG-GGUCuuGGGccUGGgagUCCGGGGUg -3'
miRNA:   3'- -GGCuCCGGggCCU--ACUa--AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 152798 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 149720 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 146643 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 143565 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 131944 0.66 0.926291
Target:  5'- -gGGGGCccaCCCGGAUG---CCAAGGcCa -3'
miRNA:   3'- ggCUCCG---GGGCCUACuaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 122517 0.66 0.925764
Target:  5'- -gGAGGCcgcggagCCCGGGUGGUUCgcggaacuCGAGGcCg -3'
miRNA:   3'- ggCUCCG-------GGGCCUACUAAG--------GUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 61526 0.66 0.915303
Target:  5'- -gGAGGCCuCCGGug---UCCGGGGg- -3'
miRNA:   3'- ggCUCCGG-GGCCuacuaAGGUUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.