miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 122335 1.12 0.002168
Target:  5'- cCCGAGGCCCCGGAUGAUUCCAAGGUCg -3'
miRNA:   3'- -GGCUCCGGGGCCUACUAAGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 40315 0.77 0.363698
Target:  5'- gUCGGGGCCUCGGuggGGUUCaacgaGAGGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCua-CUAAGg----UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 39733 0.76 0.404533
Target:  5'- aCgGGGGCCUCGGAgUGAUUgaCCAGGGUg -3'
miRNA:   3'- -GgCUCCGGGGCCU-ACUAA--GGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 33346 0.74 0.532607
Target:  5'- uCCGGGGCagCCGGGUGGccgCCGguGGGUCc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 40892 0.74 0.532607
Target:  5'- gCCGGGGCCucgucugcgauCCGGGcgcgauggaUGGUUCC-AGGUCg -3'
miRNA:   3'- -GGCUCCGG-----------GGCCU---------ACUAAGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 33224 0.74 0.532607
Target:  5'- uCCGGGGCagCCGGGUGGccgCCGgcGGGUCc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 89377 0.73 0.581958
Target:  5'- cCCGAGGUCUCGuGGUGGgcaCCGAGGg- -3'
miRNA:   3'- -GGCUCCGGGGC-CUACUaa-GGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 48579 0.73 0.601986
Target:  5'- uCCGGGGCCUCGGGggucaggGAggCCAgaaGGGUg -3'
miRNA:   3'- -GGCUCCGGGGCCUa------CUaaGGU---UCCAg -5'
28781 5' -56.2 NC_006146.1 + 8516 0.73 0.571994
Target:  5'- aCCGGGGUCCCGGGcgcgGGcgcgCCAAGGg- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaa--GGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 6708 0.73 0.581958
Target:  5'- cCCGGGuacaaGUCCCGGGUGGUgaagaCGGGGUCu -3'
miRNA:   3'- -GGCUC-----CGGGGCCUACUAag---GUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 57344 0.73 0.571994
Target:  5'- gCGGGGCCCCGGGUGucggUgAGGGa- -3'
miRNA:   3'- gGCUCCGGGGCCUACuaa-GgUUCCag -5'
28781 5' -56.2 NC_006146.1 + 50007 0.72 0.622099
Target:  5'- uCgGAGGCgaUCCGGuUGAUgcagCCGGGGUCg -3'
miRNA:   3'- -GgCUCCG--GGGCCuACUAa---GGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 26259 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 23181 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 20103 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 29337 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 45424 0.72 0.662353
Target:  5'- gCGAGGCCCCGGccgGGUUgaaguggaacUguAGGUCa -3'
miRNA:   3'- gGCUCCGGGGCCua-CUAA----------GguUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 64909 0.72 0.662353
Target:  5'- -aGGGGUCgUGGAUGGgcUCCAGGGUUa -3'
miRNA:   3'- ggCUCCGGgGCCUACUa-AGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 17025 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 40233 0.71 0.692323
Target:  5'- -aGGGGCCCgGGAUGuagUCCGaccucGGGUg -3'
miRNA:   3'- ggCUCCGGGgCCUACua-AGGU-----UCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.