miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 3894 0.69 0.78774
Target:  5'- gCGAGGCCCaccGAcGAggcccCCAAGGUCu -3'
miRNA:   3'- gGCUCCGGGgc-CUaCUaa---GGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 4577 0.66 0.920913
Target:  5'- aCCGA-GCaCCCGGGccUGGUuUuuGAGGUCg -3'
miRNA:   3'- -GGCUcCG-GGGCCU--ACUA-AggUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 6708 0.73 0.581958
Target:  5'- cCCGGGuacaaGUCCCGGGUGGUgaagaCGGGGUCu -3'
miRNA:   3'- -GGCUC-----CGGGGCCUACUAag---GUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 8516 0.73 0.571994
Target:  5'- aCCGGGGUCCCGGGcgcgGGcgcgCCAAGGg- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaa--GGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 10100 0.67 0.897101
Target:  5'- gUGAGGaCCCCGGucGAggCguGGGUCu -3'
miRNA:   3'- gGCUCC-GGGGCCuaCUaaGguUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 12757 0.67 0.869725
Target:  5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3'
miRNA:   3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 13948 0.7 0.741184
Target:  5'- cCCGAGGCCCCGGcuccUGAgcucaugUCCcaaGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUa------AGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 14846 0.7 0.741184
Target:  5'- cCCGGGGCCgCGG--GAggCCGAGGg- -3'
miRNA:   3'- -GGCUCCGGgGCCuaCUaaGGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 15836 0.67 0.869725
Target:  5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3'
miRNA:   3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 17025 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 18914 0.67 0.869725
Target:  5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3'
miRNA:   3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 20103 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 21991 0.67 0.869725
Target:  5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3'
miRNA:   3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 23181 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 23467 0.69 0.814116
Target:  5'- aCGAGGCCCUGGccGuggCCA-GGUa -3'
miRNA:   3'- gGCUCCGGGGCCuaCuaaGGUuCCAg -5'
28781 5' -56.2 NC_006146.1 + 25069 0.67 0.869725
Target:  5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3'
miRNA:   3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 26259 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 28147 0.67 0.869725
Target:  5'- cCCGAGGUUggagCCGGcgGGcgCCAccAGGUCc -3'
miRNA:   3'- -GGCUCCGG----GGCCuaCUaaGGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 29337 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 32879 0.67 0.87689
Target:  5'- gCGAGGuCCCUGccUGGcaCCAGGGUCc -3'
miRNA:   3'- gGCUCC-GGGGCcuACUaaGGUUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.