miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 33100 0.67 0.897101
Target:  5'- uCUGGGGCagCCGGGUGGccgCCGgcGGGUUc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 33224 0.74 0.532607
Target:  5'- uCCGGGGCagCCGGGUGGccgCCGgcGGGUCc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 33322 0.68 0.862352
Target:  5'- cCUGGGGCUCCGGGg---UCC-GGGUg -3'
miRNA:   3'- -GGCUCCGGGGCCUacuaAGGuUCCAg -5'
28781 5' -56.2 NC_006146.1 + 33346 0.74 0.532607
Target:  5'- uCCGGGGCagCCGGGUGGccgCCGguGGGUCc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 33444 0.71 0.712074
Target:  5'- cCUGGGGCUCCGGGUGca-CCugaaaggcaaugGGGGUCg -3'
miRNA:   3'- -GGCUCCGGGGCCUACuaaGG------------UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 39733 0.76 0.404533
Target:  5'- aCgGGGGCCUCGGAgUGAUUgaCCAGGGUg -3'
miRNA:   3'- -GgCUCCGGGGCCU-ACUAA--GGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 40233 0.71 0.692323
Target:  5'- -aGGGGCCCgGGAUGuagUCCGaccucGGGUg -3'
miRNA:   3'- ggCUCCGGGgCCUACua-AGGU-----UCCAg -5'
28781 5' -56.2 NC_006146.1 + 40315 0.77 0.363698
Target:  5'- gUCGGGGCCUCGGuggGGUUCaacgaGAGGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCua-CUAAGg----UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 40892 0.74 0.532607
Target:  5'- gCCGGGGCCucgucugcgauCCGGGcgcgauggaUGGUUCC-AGGUCg -3'
miRNA:   3'- -GGCUCCGG-----------GGCCU---------ACUAAGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 41064 0.69 0.796679
Target:  5'- -gGGGGCCUCGGGguggaggGAggCCAGGGa- -3'
miRNA:   3'- ggCUCCGGGGCCUa------CUaaGGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 44516 0.67 0.897101
Target:  5'- -aGAGGCCCCuGGUGGgaUCCAuGG-Ca -3'
miRNA:   3'- ggCUCCGGGGcCUACUa-AGGUuCCaG- -5'
28781 5' -56.2 NC_006146.1 + 44560 0.7 0.745962
Target:  5'- gCCGGGGCUCCGGGUGGcuggcggaaaugCCAGGaggacgaGUCg -3'
miRNA:   3'- -GGCUCCGGGGCCUACUaa----------GGUUC-------CAG- -5'
28781 5' -56.2 NC_006146.1 + 44816 0.67 0.883844
Target:  5'- uCUGAGGCCCCGcugcggcuGGUGA--CgGAGGUg -3'
miRNA:   3'- -GGCUCCGGGGC--------CUACUaaGgUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 44960 0.69 0.78774
Target:  5'- -gGAGGCCCCGGggGAcucgaCCGcGGUg -3'
miRNA:   3'- ggCUCCGGGGCCuaCUaa---GGUuCCAg -5'
28781 5' -56.2 NC_006146.1 + 45424 0.72 0.662353
Target:  5'- gCGAGGCCCCGGccgGGUUgaaguggaacUguAGGUCa -3'
miRNA:   3'- gGCUCCGGGGCCua-CUAA----------GguUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 47257 0.67 0.87689
Target:  5'- aCGuGGCCCCuggcccGGGUGA---CGAGGUCc -3'
miRNA:   3'- gGCuCCGGGG------CCUACUaagGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 47315 0.67 0.897101
Target:  5'- cCCG-GGCCuCCuGGAUGAUggccUCCAgccGGGcCa -3'
miRNA:   3'- -GGCuCCGG-GG-CCUACUA----AGGU---UCCaG- -5'
28781 5' -56.2 NC_006146.1 + 48579 0.73 0.601986
Target:  5'- uCCGGGGCCUCGGGggucaggGAggCCAgaaGGGUg -3'
miRNA:   3'- -GGCUCCGGGGCCUa------CUaaGGU---UCCAg -5'
28781 5' -56.2 NC_006146.1 + 49148 0.66 0.926291
Target:  5'- aCC-AGGCgCaCGGGU---UCCAGGGUCa -3'
miRNA:   3'- -GGcUCCGgG-GCCUAcuaAGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 49568 0.69 0.78774
Target:  5'- aCUGAGGCCCaGcGcUGAggCCAGGGUg -3'
miRNA:   3'- -GGCUCCGGGgC-CuACUaaGGUUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.