miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 167709 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 108973 0.71 0.702227
Target:  5'- aCCaGGGCCCUGGAgccccUGAUggcCCGccGGGUCu -3'
miRNA:   3'- -GGcUCCGGGGCCU-----ACUAa--GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 26259 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 33346 0.74 0.532607
Target:  5'- uCCGGGGCagCCGGGUGGccgCCGguGGGUCc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 135367 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 119331 0.7 0.769464
Target:  5'- cCCG-GGCCCCucccGGcgGcgcCCAGGGUCa -3'
miRNA:   3'- -GGCuCCGGGG----CCuaCuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 170225 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 33224 0.74 0.532607
Target:  5'- uCCGGGGCagCCGGGUGGccgCCGgcGGGUCc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 158731 0.7 0.769464
Target:  5'- cCCGAGGCCCCcGA-GAU-CacguaGGGGUCu -3'
miRNA:   3'- -GGCUCCGGGGcCUaCUAaGg----UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 39733 0.76 0.404533
Target:  5'- aCgGGGGCCUCGGAgUGAUUgaCCAGGGUg -3'
miRNA:   3'- -GgCUCCGGGGCCU-ACUAA--GGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 99549 0.71 0.702227
Target:  5'- uCCGAGcCCCCGGGgcaGAgaUCGGGGUCc -3'
miRNA:   3'- -GGCUCcGGGGCCUa--CUaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 169574 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 167430 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 29337 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 17025 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 57344 0.73 0.571994
Target:  5'- gCGGGGCCCCGGGUGucggUgAGGGa- -3'
miRNA:   3'- gGCUCCGGGGCCUACuaa-GgUUCCag -5'
28781 5' -56.2 NC_006146.1 + 135738 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 135460 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 144774 0.69 0.822598
Target:  5'- aCCG-GGCCCCGG-UGccuUUCCAuGGa- -3'
miRNA:   3'- -GGCuCCGGGGCCuACu--AAGGUuCCag -5'
28781 5' -56.2 NC_006146.1 + 44960 0.69 0.78774
Target:  5'- -gGAGGCCCCGGggGAcucgaCCGcGGUg -3'
miRNA:   3'- ggCUCCGGGGCCuaCUaa---GGUuCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.