miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 40315 0.77 0.363698
Target:  5'- gUCGGGGCCUCGGuggGGUUCaacgaGAGGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCua-CUAAGg----UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 50540 0.69 0.822598
Target:  5'- gCCGcuccAGGUCCCGGGUGGgcaCCugcAGGUUu -3'
miRNA:   3'- -GGC----UCCGGGGCCUACUaa-GGu--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 3894 0.69 0.78774
Target:  5'- gCGAGGCCCaccGAcGAggcccCCAAGGUCu -3'
miRNA:   3'- gGCUCCGGGgc-CUaCUaa---GGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 33444 0.71 0.712074
Target:  5'- cCUGGGGCUCCGGGUGca-CCugaaaggcaaugGGGGUCg -3'
miRNA:   3'- -GGCUCCGGGGCCUACuaaGG------------UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 64909 0.72 0.662353
Target:  5'- -aGGGGUCgUGGAUGGgcUCCAGGGUUa -3'
miRNA:   3'- ggCUCCGGgGCCUACUa-AGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 135553 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 135181 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 20103 0.72 0.652305
Target:  5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5'
28781 5' -56.2 NC_006146.1 + 13948 0.7 0.741184
Target:  5'- cCCGAGGCCCCGGcuccUGAgcucaugUCCcaaGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUa------AGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 167709 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 48579 0.73 0.601986
Target:  5'- uCCGGGGCCUCGGGggucaggGAggCCAgaaGGGUg -3'
miRNA:   3'- -GGCUCCGGGGCCUa------CUaaGGU---UCCAg -5'
28781 5' -56.2 NC_006146.1 + 6708 0.73 0.581958
Target:  5'- cCCGGGuacaaGUCCCGGGUGGUgaagaCGGGGUCu -3'
miRNA:   3'- -GGCUC-----CGGGGCCUACUAag---GUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 135831 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 135646 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 44960 0.69 0.78774
Target:  5'- -gGAGGCCCCGGggGAcucgaCCGcGGUg -3'
miRNA:   3'- ggCUCCGGGGCCuaCUaa---GGUuCCAg -5'
28781 5' -56.2 NC_006146.1 + 168362 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 45424 0.72 0.662353
Target:  5'- gCGAGGCCCCGGccgGGUUgaaguggaacUguAGGUCa -3'
miRNA:   3'- gGCUCCGGGGCCua-CUAA----------GguUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 57344 0.73 0.571994
Target:  5'- gCGGGGCCCCGGGUGucggUgAGGGa- -3'
miRNA:   3'- gGCUCCGGGGCCUACuaa-GgUUCCag -5'
28781 5' -56.2 NC_006146.1 + 52337 0.7 0.731561
Target:  5'- gCCGGGGUgCCCGGGgcgGcgUCCuuuuggcagugGGGGUCg -3'
miRNA:   3'- -GGCUCCG-GGGCCUa--CuaAGG-----------UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 149823 0.7 0.741184
Target:  5'- --cAGGCUCCGGGUGGUgugggcggCCAGGGcCu -3'
miRNA:   3'- ggcUCCGGGGCCUACUAa-------GGUUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.