miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 168362 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 169294 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 170225 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 40233 0.71 0.692323
Target:  5'- -aGGGGCCCgGGAUGuagUCCGaccucGGGUg -3'
miRNA:   3'- ggCUCCGGGgCCUACua-AGGU-----UCCAg -5'
28781 5' -56.2 NC_006146.1 + 99549 0.71 0.702227
Target:  5'- uCCGAGcCCCCGGGgcaGAgaUCGGGGUCc -3'
miRNA:   3'- -GGCUCcGGGGCCUa--CUaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 108973 0.71 0.702227
Target:  5'- aCCaGGGCCCUGGAgccccUGAUggcCCGccGGGUCu -3'
miRNA:   3'- -GGcUCCGGGGCCU-----ACUAa--GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 33444 0.71 0.712074
Target:  5'- cCUGGGGCUCCGGGUGca-CCugaaaggcaaugGGGGUCg -3'
miRNA:   3'- -GGCUCCGGGGCCUACuaaGG------------UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 169574 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 52337 0.7 0.731561
Target:  5'- gCCGGGGUgCCCGGGgcgGcgUCCuuuuggcagugGGGGUCg -3'
miRNA:   3'- -GGCUCCG-GGGCCUa--CuaAGG-----------UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 167709 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 13948 0.7 0.741184
Target:  5'- cCCGAGGCCCCGGcuccUGAgcucaugUCCcaaGUCc -3'
miRNA:   3'- -GGCUCCGGGGCCu---ACUa------AGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 149823 0.7 0.741184
Target:  5'- --cAGGCUCCGGGUGGUgugggcggCCAGGGcCu -3'
miRNA:   3'- ggcUCCGGGGCCUACUAa-------GGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 76924 0.7 0.741184
Target:  5'- gCGGGGCUgcagCCGGGUGAacugCCGcuggAGGUCg -3'
miRNA:   3'- gGCUCCGG----GGCCUACUaa--GGU----UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 138795 0.7 0.741184
Target:  5'- -gGAGaGCUUCGGAUGGgcCCGGGGUUg -3'
miRNA:   3'- ggCUC-CGGGGCCUACUaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 14846 0.7 0.741184
Target:  5'- cCCGGGGCCgCGG--GAggCCGAGGg- -3'
miRNA:   3'- -GGCUCCGGgGCCuaCUaaGGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 44560 0.7 0.745962
Target:  5'- gCCGGGGCUCCGGGUGGcuggcggaaaugCCAGGaggacgaGUCg -3'
miRNA:   3'- -GGCUCCGGGGCCUACUaa----------GGUUC-------CAG- -5'
28781 5' -56.2 NC_006146.1 + 158731 0.7 0.769464
Target:  5'- cCCGAGGCCCCcGA-GAU-CacguaGGGGUCu -3'
miRNA:   3'- -GGCUCCGGGGcCUaCUAaGg----UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 119331 0.7 0.769464
Target:  5'- cCCG-GGCCCCucccGGcgGcgcCCAGGGUCa -3'
miRNA:   3'- -GGCuCCGGGG----CCuaCuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 71083 0.69 0.785031
Target:  5'- aCCGAGGCCCCGaacacccccucgccGGUGcccUUCCGAGa-- -3'
miRNA:   3'- -GGCUCCGGGGC--------------CUACu--AAGGUUCcag -5'
28781 5' -56.2 NC_006146.1 + 49568 0.69 0.78774
Target:  5'- aCUGAGGCCCaGcGcUGAggCCAGGGUg -3'
miRNA:   3'- -GGCUCCGGGgC-CuACUaaGGUUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.