miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 137218 0.66 0.909463
Target:  5'- cCCGGGGaggaagCCGGGUGGgggCCuGGGGUCc -3'
miRNA:   3'- -GGCUCCgg----GGCCUACUaa-GG-UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 65089 0.66 0.909463
Target:  5'- gCCGGGGaCCCCuGGGUGuucuUUCCcgucuGGGa- -3'
miRNA:   3'- -GGCUCC-GGGG-CCUACu---AAGGu----UCCag -5'
28781 5' -56.2 NC_006146.1 + 130023 0.67 0.903395
Target:  5'- aCGAGGCCCCGGcuccgUCUccGGa- -3'
miRNA:   3'- gGCUCCGGGGCCuacuaAGGuuCCag -5'
28781 5' -56.2 NC_006146.1 + 65210 0.67 0.903395
Target:  5'- -gGGGGCCCUGGGagcccggGcgUCCAgAGGUg -3'
miRNA:   3'- ggCUCCGGGGCCUa------CuaAGGU-UCCAg -5'
28781 5' -56.2 NC_006146.1 + 69850 0.67 0.902154
Target:  5'- cCCGuGGCCCUGGGaGGUcgggcguagaggCCcAGGUCc -3'
miRNA:   3'- -GGCuCCGGGGCCUaCUAa-----------GGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 47315 0.67 0.897101
Target:  5'- cCCG-GGCCuCCuGGAUGAUggccUCCAgccGGGcCa -3'
miRNA:   3'- -GGCuCCGG-GG-CCUACUA----AGGU---UCCaG- -5'
28781 5' -56.2 NC_006146.1 + 10100 0.67 0.897101
Target:  5'- gUGAGGaCCCCGGucGAggCguGGGUCu -3'
miRNA:   3'- gGCUCC-GGGGCCuaCUaaGguUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 44516 0.67 0.897101
Target:  5'- -aGAGGCCCCuGGUGGgaUCCAuGG-Ca -3'
miRNA:   3'- ggCUCCGGGGcCUACUa-AGGUuCCaG- -5'
28781 5' -56.2 NC_006146.1 + 33100 0.67 0.897101
Target:  5'- uCUGGGGCagCCGGGUGGccgCCGgcGGGUUc -3'
miRNA:   3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 169994 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 118682 0.67 0.890582
Target:  5'- cCCGAGGCCuUCGaGAUGGaggacCCucGGGUCu -3'
miRNA:   3'- -GGCUCCGG-GGC-CUACUaa---GGu-UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 168130 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 167657 0.67 0.890582
Target:  5'- gCCGGGGgCCCGGggGcgUgucccgcgacCCGAGGg- -3'
miRNA:   3'- -GGCUCCgGGGCCuaCuaA----------GGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 169062 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 167198 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 144655 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 44816 0.67 0.883844
Target:  5'- uCUGAGGCCCCGcugcggcuGGUGA--CgGAGGUg -3'
miRNA:   3'- -GGCUCCGGGGC--------CUACUaaGgUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 123173 0.67 0.883844
Target:  5'- -gGAGGCCCCGGAcGAcgagcUCCGGGc-- -3'
miRNA:   3'- ggCUCCGGGGCCUaCUa----AGGUUCcag -5'
28781 5' -56.2 NC_006146.1 + 156966 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 141577 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.