Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28781 | 5' | -56.2 | NC_006146.1 | + | 40315 | 0.77 | 0.363698 |
Target: 5'- gUCGGGGCCUCGGuggGGUUCaacgaGAGGUCu -3' miRNA: 3'- -GGCUCCGGGGCCua-CUAAGg----UUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 170225 | 0.71 | 0.671376 |
Target: 5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3' miRNA: 3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 108973 | 0.71 | 0.702227 |
Target: 5'- aCCaGGGCCCUGGAgccccUGAUggcCCGccGGGUCu -3' miRNA: 3'- -GGcUCCGGGGCCU-----ACUAa--GGU--UCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 99384 | 0.66 | 0.936353 |
Target: 5'- uUGAGGCCCaGGAgcGAgucggCCAGGGg- -3' miRNA: 3'- gGCUCCGGGgCCUa-CUaa---GGUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 57344 | 0.73 | 0.571994 |
Target: 5'- gCGGGGCCCCGGGUGucggUgAGGGa- -3' miRNA: 3'- gGCUCCGGGGCCUACuaa-GgUUCCag -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 6708 | 0.73 | 0.581958 |
Target: 5'- cCCGGGuacaaGUCCCGGGUGGUgaagaCGGGGUCu -3' miRNA: 3'- -GGCUC-----CGGGGCCUACUAag---GUUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 17025 | 0.72 | 0.652305 |
Target: 5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3' miRNA: 3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 20103 | 0.72 | 0.652305 |
Target: 5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3' miRNA: 3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 29337 | 0.72 | 0.652305 |
Target: 5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3' miRNA: 3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 169294 | 0.71 | 0.671376 |
Target: 5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3' miRNA: 3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 45424 | 0.72 | 0.662353 |
Target: 5'- gCGAGGCCCCGGccgGGUUgaaguggaacUguAGGUCa -3' miRNA: 3'- gGCUCCGGGGCCua-CUAA----------GguUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 26259 | 0.72 | 0.652305 |
Target: 5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3' miRNA: 3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 39733 | 0.76 | 0.404533 |
Target: 5'- aCgGGGGCCUCGGAgUGAUUgaCCAGGGUg -3' miRNA: 3'- -GgCUCCGGGGCCU-ACUAA--GGUUCCAg -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 167430 | 0.71 | 0.671376 |
Target: 5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3' miRNA: 3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 33224 | 0.74 | 0.532607 |
Target: 5'- uCCGGGGCagCCGGGUGGccgCCGgcGGGUCc -3' miRNA: 3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 23181 | 0.72 | 0.652305 |
Target: 5'- cCCGAGGCCCCGGcuccUGAgcUCAcuGUCc -3' miRNA: 3'- -GGCUCCGGGGCCu---ACUaaGGUucCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 168362 | 0.71 | 0.671376 |
Target: 5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3' miRNA: 3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 99549 | 0.71 | 0.702227 |
Target: 5'- uCCGAGcCCCCGGGgcaGAgaUCGGGGUCc -3' miRNA: 3'- -GGCUCcGGGGCCUa--CUaaGGUUCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 33346 | 0.74 | 0.532607 |
Target: 5'- uCCGGGGCagCCGGGUGGccgCCGguGGGUCc -3' miRNA: 3'- -GGCUCCGg-GGCCUACUaa-GGU--UCCAG- -5' |
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28781 | 5' | -56.2 | NC_006146.1 | + | 48579 | 0.73 | 0.601986 |
Target: 5'- uCCGGGGCCUCGGGggucaggGAggCCAgaaGGGUg -3' miRNA: 3'- -GGCUCCGGGGCCUa------CUaaGGU---UCCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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