miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 123173 0.67 0.883844
Target:  5'- -gGAGGCCCCGGAcGAcgagcUCCGGGc-- -3'
miRNA:   3'- ggCUCCGGGGCCUaCUa----AGGUUCcag -5'
28781 5' -56.2 NC_006146.1 + 44516 0.67 0.897101
Target:  5'- -aGAGGCCCCuGGUGGgaUCCAuGG-Ca -3'
miRNA:   3'- ggCUCCGGGGcCUACUa-AGGUuCCaG- -5'
28781 5' -56.2 NC_006146.1 + 118682 0.67 0.890582
Target:  5'- cCCGAGGCCuUCGaGAUGGaggacCCucGGGUCu -3'
miRNA:   3'- -GGCUCCGG-GGC-CUACUaa---GGu-UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 156966 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 153888 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 150810 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 147732 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 144655 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 141577 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 10100 0.67 0.897101
Target:  5'- gUGAGGaCCCCGGucGAggCguGGGUCu -3'
miRNA:   3'- gGCUCC-GGGGCCuaCUaaGguUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 124934 0.66 0.909463
Target:  5'- gCGAGgagcuGCCCCGGGcagaGAgcgUCGAGGUCc -3'
miRNA:   3'- gGCUC-----CGGGGCCUa---CUaa-GGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137218 0.66 0.909463
Target:  5'- cCCGGGGaggaagCCGGGUGGgggCCuGGGGUCc -3'
miRNA:   3'- -GGCUCCgg----GGCCUACUaa-GG-UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 154670 0.66 0.931438
Target:  5'- gCCG-GGUCuuGGGccUGGgagUCCGGGGUg -3'
miRNA:   3'- -GGCuCCGGggCCU--ACUa--AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 152798 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 149720 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 146643 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 143565 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 131944 0.66 0.926291
Target:  5'- -gGGGGCccaCCCGGAUG---CCAAGGcCa -3'
miRNA:   3'- ggCUCCG---GGGCCUACuaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 122517 0.66 0.925764
Target:  5'- -gGAGGCcgcggagCCCGGGUGGUUCgcggaacuCGAGGcCg -3'
miRNA:   3'- ggCUCCG-------GGGCCUACUAAG--------GUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 61526 0.66 0.915303
Target:  5'- -gGAGGCCuCCGGug---UCCGGGGg- -3'
miRNA:   3'- ggCUCCGG-GGCCuacuaAGGUUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.