miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 154368 0.68 0.854779
Target:  5'- uCUGGGGCcaCCCGGGcug--CCGGGGUCc -3'
miRNA:   3'- -GGCUCCG--GGGCCUacuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 153888 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 152798 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 151806 0.68 0.839053
Target:  5'- cCCaAGGCCaCCGGgcGGggCCAGGGcCu -3'
miRNA:   3'- -GGcUCCGG-GGCCuaCUaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 151290 0.68 0.854779
Target:  5'- uCUGGGGCcaCCCGGGcug--CCGGGGUCc -3'
miRNA:   3'- -GGCUCCG--GGGCCUacuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 150810 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 149823 0.7 0.741184
Target:  5'- --cAGGCUCCGGGUGGUgugggcggCCAGGGcCu -3'
miRNA:   3'- ggcUCCGGGGCCUACUAa-------GGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 149720 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 148728 0.68 0.839053
Target:  5'- cCCaAGGCCaCCGGgcGGggCCAGGGcCu -3'
miRNA:   3'- -GGcUCCGG-GGCCuaCUaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 148212 0.68 0.854779
Target:  5'- uCUGGGGCcaCCCGGGcug--CCGGGGUCc -3'
miRNA:   3'- -GGCUCCG--GGGCCUacuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 147732 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 146643 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 146642 0.66 0.915303
Target:  5'- aCGAGGCCUgGG-----UCCAuGGUCa -3'
miRNA:   3'- gGCUCCGGGgCCuacuaAGGUuCCAG- -5'
28781 5' -56.2 NC_006146.1 + 145651 0.68 0.839053
Target:  5'- cCCaAGGCCaCCGGgcGGggCCAGGGcCu -3'
miRNA:   3'- -GGcUCCGG-GGCCuaCUaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 145134 0.68 0.854779
Target:  5'- uCUGGGGCcaCCCGGGcug--CCGGGGUCc -3'
miRNA:   3'- -GGCUCCG--GGGCCUacuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 144774 0.69 0.822598
Target:  5'- aCCG-GGCCCCGG-UGccuUUCCAuGGa- -3'
miRNA:   3'- -GGCuCCGGGGCCuACu--AAGGUuCCag -5'
28781 5' -56.2 NC_006146.1 + 144655 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 143565 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 142573 0.68 0.839053
Target:  5'- cCCaAGGCCaCCGGgcGGggCCAGGGcCu -3'
miRNA:   3'- -GGcUCCGG-GGCCuaCUaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 142056 0.68 0.854779
Target:  5'- uCUGGGGCcaCCCGGGcug--CCGGGGUCc -3'
miRNA:   3'- -GGCUCCG--GGGCCUacuaaGGUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.