miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 170225 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 169994 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 169574 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 169294 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 169062 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 168362 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 168130 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 167709 0.7 0.731561
Target:  5'- cCCGGGGCCCgagcgcgcguCGGGUGGggCCuGAGGg- -3'
miRNA:   3'- -GGCUCCGGG----------GCCUACUaaGG-UUCCag -5'
28781 5' -56.2 NC_006146.1 + 167657 0.67 0.890582
Target:  5'- gCCGGGGgCCCGGggGcgUgucccgcgacCCGAGGg- -3'
miRNA:   3'- -GGCUCCgGGGCCuaCuaA----------GGUUCCag -5'
28781 5' -56.2 NC_006146.1 + 167430 0.71 0.671376
Target:  5'- gCGGGGUCCCGGGgcggggGGUcgggcgggcaugcUCCGGGGUa -3'
miRNA:   3'- gGCUCCGGGGCCUa-----CUA-------------AGGUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 167198 0.67 0.890582
Target:  5'- cCCGGGGUCCCGGggGGcggcgcgcggccUUCCcccGUCu -3'
miRNA:   3'- -GGCUCCGGGGCCuaCU------------AAGGuucCAG- -5'
28781 5' -56.2 NC_006146.1 + 161269 0.67 0.883844
Target:  5'- gCCGcauGCgCCUGGggGAgaCCGAGGUCa -3'
miRNA:   3'- -GGCuc-CG-GGGCCuaCUaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 159248 0.69 0.796679
Target:  5'- gCGAGGaCCCCGcaAUGAggaUCCuGGGGUCg -3'
miRNA:   3'- gGCUCC-GGGGCc-UACUa--AGG-UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 158731 0.7 0.769464
Target:  5'- cCCGAGGCCCCcGA-GAU-CacguaGGGGUCu -3'
miRNA:   3'- -GGCUCCGGGGcCUaCUAaGg----UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 157962 0.68 0.839053
Target:  5'- cCCaAGGCCaCCGGgcGGggCCAGGGcCu -3'
miRNA:   3'- -GGcUCCGG-GGCCuaCUaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 157446 0.68 0.854779
Target:  5'- uCUGGGGCcaCCCGGGcug--CCGGGGUCc -3'
miRNA:   3'- -GGCUCCG--GGGCCUacuaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 156966 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 155876 0.66 0.931438
Target:  5'- cCUGGGGgCCCGGGccUGGaaggUCCGguggcuucgcuuGGGUCu -3'
miRNA:   3'- -GGCUCCgGGGCCU--ACUa---AGGU------------UCCAG- -5'
28781 5' -56.2 NC_006146.1 + 154884 0.68 0.839053
Target:  5'- cCCaAGGCCaCCGGgcGGggCCAGGGcCu -3'
miRNA:   3'- -GGcUCCGG-GGCCuaCUaaGGUUCCaG- -5'
28781 5' -56.2 NC_006146.1 + 154670 0.66 0.931438
Target:  5'- gCCG-GGUCuuGGGccUGGgagUCCGGGGUg -3'
miRNA:   3'- -GGCuCCGGggCCU--ACUa--AGGUUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.