miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28781 5' -56.2 NC_006146.1 + 141577 0.67 0.883844
Target:  5'- gCCGGGGCCUCGGGgaggGAga--GAGGa- -3'
miRNA:   3'- -GGCUCCGGGGCCUa---CUaaggUUCCag -5'
28781 5' -56.2 NC_006146.1 + 138795 0.7 0.741184
Target:  5'- -gGAGaGCUUCGGAUGGgcCCGGGGUUg -3'
miRNA:   3'- ggCUC-CGGGGCCUACUaaGGUUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137983 0.66 0.915303
Target:  5'- cCCGGGGgCCCGGcgGggUggGGGGUg -3'
miRNA:   3'- -GGCUCCgGGGCCuaCuaAggUUCCAg -5'
28781 5' -56.2 NC_006146.1 + 137504 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137411 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137318 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137225 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137218 0.66 0.909463
Target:  5'- cCCGGGGaggaagCCGGGUGGgggCCuGGGGUCc -3'
miRNA:   3'- -GGCUCCgg----GGCCUACUaa-GG-UUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137132 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 137039 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136946 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136853 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136760 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136668 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136575 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136482 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136389 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136296 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136203 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5'
28781 5' -56.2 NC_006146.1 + 136110 0.68 0.84701
Target:  5'- cUCGGGGCCgggggCCGGGUGcc-CCuGGGUCc -3'
miRNA:   3'- -GGCUCCGG-----GGCCUACuaaGGuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.