miRNA display CGI


Results 21 - 40 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 3' -59.3 NC_006146.1 + 84778 0.71 0.531741
Target:  5'- aCUGCC-CaguAGGAGCGGCUGaAAGGUg -3'
miRNA:   3'- gGGCGGaGgc-UCCUCGUCGAC-UUCCG- -5'
28782 3' -59.3 NC_006146.1 + 160040 0.71 0.509928
Target:  5'- gCCCGgCUCCacggugaugccgcaGAGGAGCGGCacagucAGGCa -3'
miRNA:   3'- -GGGCgGAGG--------------CUCCUCGUCGacu---UCCG- -5'
28782 3' -59.3 NC_006146.1 + 149557 0.73 0.409164
Target:  5'- gCCCGCCggcagccccUCCGAgaaugacucuuggaaGGGGCGGCgggagaGGAGGCu -3'
miRNA:   3'- -GGGCGG---------AGGCU---------------CCUCGUCGa-----CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 170473 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 169642 0.69 0.648336
Target:  5'- uCCCGUUggCGGGGAGaauaCAGCUGGgcguggcGGGCg -3'
miRNA:   3'- -GGGCGGagGCUCCUC----GUCGACU-------UCCG- -5'
28782 3' -59.3 NC_006146.1 + 139155 0.7 0.590029
Target:  5'- uCCCGuCCcCCGGGGgggcgccugugaGGCGGCUGuuguugucaaaGGGGCg -3'
miRNA:   3'- -GGGC-GGaGGCUCC------------UCGUCGAC-----------UUCCG- -5'
28782 3' -59.3 NC_006146.1 + 131205 0.72 0.494048
Target:  5'- cUCUGCCUCC--GGAGCGGCgcUGcAGGCc -3'
miRNA:   3'- -GGGCGGAGGcuCCUCGUCG--ACuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 169542 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 48306 0.7 0.590029
Target:  5'- cCUCGCCcuccaCCGucGGAGguGCUGgcGGUg -3'
miRNA:   3'- -GGGCGGa----GGCu-CCUCguCGACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 168610 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 53540 0.72 0.494048
Target:  5'- gCCGCgaggaCCGAGGGGCuuCUGggGGUg -3'
miRNA:   3'- gGGCGga---GGCUCCUCGucGACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 56827 0.71 0.541331
Target:  5'- uCUgGCCcCCGAGGcggccucuGGCGGC-GggGGCg -3'
miRNA:   3'- -GGgCGGaGGCUCC--------UCGUCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 56565 0.72 0.448741
Target:  5'- cCCCGuccaCCUCCGucAGGGGCGGCc--GGGCg -3'
miRNA:   3'- -GGGC----GGAGGC--UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 54030 0.73 0.422685
Target:  5'- -gCGCCUCCGGaGGGCGGCcaUGucGGCg -3'
miRNA:   3'- ggGCGGAGGCUcCUCGUCG--ACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 45672 0.74 0.381349
Target:  5'- aCCGUCUCCGccaGGGAGCGGa--AGGGCu -3'
miRNA:   3'- gGGCGGAGGC---UCCUCGUCgacUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 127712 0.78 0.212243
Target:  5'- cCCCGCCUCCcgcGAGgAGCUGAugGGGCu -3'
miRNA:   3'- -GGGCGGAGGcucCUCgUCGACU--UCCG- -5'
28782 3' -59.3 NC_006146.1 + 16198 0.69 0.659204
Target:  5'- uCCgGCCUCUccuGGGGCAGC---AGGCu -3'
miRNA:   3'- -GGgCGGAGGcu-CCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 93604 0.69 0.649324
Target:  5'- aCCCGCCgggcUCCu-GGGGCuGCUGuccuccccgGAGGCc -3'
miRNA:   3'- -GGGCGG----AGGcuCCUCGuCGAC---------UUCCG- -5'
28782 3' -59.3 NC_006146.1 + 51821 0.69 0.619637
Target:  5'- aCCCG-UUCCccGGGGCGGCguggagGggGGCu -3'
miRNA:   3'- -GGGCgGAGGcuCCUCGUCGa-----CuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 147494 0.7 0.590029
Target:  5'- gCC-CCUCCGgcAGGucCAGCgGAAGGCa -3'
miRNA:   3'- gGGcGGAGGC--UCCucGUCGaCUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.