miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 3' -59.3 NC_006146.1 + 167677 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 131205 0.72 0.494048
Target:  5'- cUCUGCCUCC--GGAGCGGCgcUGcAGGCc -3'
miRNA:   3'- -GGGCGGAGGcuCCUCGUCG--ACuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 160040 0.71 0.509928
Target:  5'- gCCCGgCUCCacggugaugccgcaGAGGAGCGGCacagucAGGCa -3'
miRNA:   3'- -GGGCgGAGG--------------CUCCUCGUCGacu---UCCG- -5'
28782 3' -59.3 NC_006146.1 + 137540 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 127712 0.78 0.212243
Target:  5'- cCCCGCCUCCcgcGAGgAGCUGAugGGGCu -3'
miRNA:   3'- -GGGCGGAGGcucCUCgUCGACU--UCCG- -5'
28782 3' -59.3 NC_006146.1 + 45054 0.78 0.227885
Target:  5'- gCCGgCUCCcuAGGGGCGGCUGAGGuGCc -3'
miRNA:   3'- gGGCgGAGGc-UCCUCGUCGACUUC-CG- -5'
28782 3' -59.3 NC_006146.1 + 45672 0.74 0.381349
Target:  5'- aCCGUCUCCGccaGGGAGCGGa--AGGGCu -3'
miRNA:   3'- gGGCGGAGGC---UCCUCGUCgacUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 159352 0.73 0.397558
Target:  5'- gCCGCCUCCagcauggcGGGGGcGUAGCUGAccgccagcucgcAGGCc -3'
miRNA:   3'- gGGCGGAGG--------CUCCU-CGUCGACU------------UCCG- -5'
28782 3' -59.3 NC_006146.1 + 54030 0.73 0.422685
Target:  5'- -gCGCCUCCGGaGGGCGGCcaUGucGGCg -3'
miRNA:   3'- ggGCGGAGGCUcCUCGUCG--ACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 128494 0.72 0.466597
Target:  5'- uCUCGCCUUCGAGGA-CGGCgucGGGGUg -3'
miRNA:   3'- -GGGCGGAGGCUCCUcGUCGac-UUCCG- -5'
28782 3' -59.3 NC_006146.1 + 53722 0.73 0.43127
Target:  5'- cCCCGUccuCUCCG-GGAGCcgcGGCUGcgccGGGGCg -3'
miRNA:   3'- -GGGCG---GAGGCuCCUCG---UCGAC----UUCCG- -5'
28782 3' -59.3 NC_006146.1 + 149557 0.73 0.409164
Target:  5'- gCCCGCCggcagccccUCCGAgaaugacucuuggaaGGGGCGGCgggagaGGAGGCu -3'
miRNA:   3'- -GGGCGG---------AGGCU---------------CCUCGUCGa-----CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 168610 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 56565 0.72 0.448741
Target:  5'- cCCCGuccaCCUCCGucAGGGGCGGCc--GGGCg -3'
miRNA:   3'- -GGGC----GGAGGC--UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 169542 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 4660 0.73 0.405827
Target:  5'- cCCCGCCguccugggCCGGGuGGGCgaGGC-GggGGCa -3'
miRNA:   3'- -GGGCGGa-------GGCUC-CUCG--UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 121469 0.72 0.452283
Target:  5'- uCCUGgCUcCCaaucccuauauuuugGAGGGGCAGCUGAcgguGGGCa -3'
miRNA:   3'- -GGGCgGA-GG---------------CUCCUCGUCGACU----UCCG- -5'
28782 3' -59.3 NC_006146.1 + 53540 0.72 0.494048
Target:  5'- gCCGCgaggaCCGAGGGGCuuCUGggGGUg -3'
miRNA:   3'- gGGCGga---GGCUCCUCGucGACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 170473 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 43070 0.75 0.314038
Target:  5'- gCCCacCCUCC-AGGGGaGGCUGGAGGCg -3'
miRNA:   3'- -GGGc-GGAGGcUCCUCgUCGACUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.