miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 3' -59.3 NC_006146.1 + 122064 1.12 0.001127
Target:  5'- gCCCGCCUCCGAGGAGCAGCUGAAGGCc -3'
miRNA:   3'- -GGGCGGAGGCUCCUCGUCGACUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 168610 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 170473 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 169542 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 167677 0.79 0.183721
Target:  5'- uCCCGCgacCCGAGGGGCgAGCgGggGGCu -3'
miRNA:   3'- -GGGCGga-GGCUCCUCG-UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 1272 0.78 0.212243
Target:  5'- cCCCGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGGCGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 127712 0.78 0.212243
Target:  5'- cCCCGCCUCCcgcGAGgAGCUGAugGGGCu -3'
miRNA:   3'- -GGGCGGAGGcucCUCgUCGACU--UCCG- -5'
28782 3' -59.3 NC_006146.1 + 2204 0.78 0.212243
Target:  5'- cCCCGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGGCGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 3136 0.78 0.212243
Target:  5'- cCCCGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGGCGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 45054 0.78 0.227885
Target:  5'- gCCGgCUCCcuAGGGGCGGCUGAGGuGCc -3'
miRNA:   3'- gGGCgGAGGc-UCCUCGUCGACUUC-CG- -5'
28782 3' -59.3 NC_006146.1 + 114799 0.77 0.238847
Target:  5'- uUCGCCUUCGuGGAGgAGCUGguGGCc -3'
miRNA:   3'- gGGCGGAGGCuCCUCgUCGACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 43070 0.75 0.314038
Target:  5'- gCCCacCCUCC-AGGGGaGGCUGGAGGCg -3'
miRNA:   3'- -GGGc-GGAGGcUCCUCgUCGACUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 20411 0.75 0.314038
Target:  5'- cUCCGCCUCCGAcaGGGaCGGCUaccaGggGGCc -3'
miRNA:   3'- -GGGCGGAGGCU--CCUcGUCGA----CuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 117805 0.75 0.321053
Target:  5'- gCCGCCUCCggacuagacgGAGGGG-AGgaGGAGGCg -3'
miRNA:   3'- gGGCGGAGG----------CUCCUCgUCgaCUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 116487 0.75 0.335434
Target:  5'- aCCC-UCUCCaccgcgGAGGAGCGGCgcgaGGAGGCg -3'
miRNA:   3'- -GGGcGGAGG------CUCCUCGUCGa---CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 86480 0.75 0.335434
Target:  5'- cCUgGgCUuuGAGGGGCAGCUGGgccuugagGGGCa -3'
miRNA:   3'- -GGgCgGAggCUCCUCGUCGACU--------UCCG- -5'
28782 3' -59.3 NC_006146.1 + 129833 0.74 0.372624
Target:  5'- aCCCGCCacgcccccgUCCGAGcGAGCccucggaAGCUGuccuAGGCc -3'
miRNA:   3'- -GGGCGG---------AGGCUC-CUCG-------UCGACu---UCCG- -5'
28782 3' -59.3 NC_006146.1 + 139127 0.74 0.373411
Target:  5'- gCUGgCUCCGAuGGcGCAGgUGggGGCa -3'
miRNA:   3'- gGGCgGAGGCU-CCuCGUCgACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 136716 0.74 0.373411
Target:  5'- cCCUGCCUggcCCaGGGucCGGCUGggGGCg -3'
miRNA:   3'- -GGGCGGA---GGcUCCucGUCGACuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 45672 0.74 0.381349
Target:  5'- aCCGUCUCCGccaGGGAGCGGa--AGGGCu -3'
miRNA:   3'- gGGCGGAGGC---UCCUCGUCgacUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.