miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 3' -59.3 NC_006146.1 + 340 0.71 0.503363
Target:  5'- uCCCgGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGG-CGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 503 0.67 0.727353
Target:  5'- cUCCGCCcCCGAGGccccCAGg-GGAGGCc -3'
miRNA:   3'- -GGGCGGaGGCUCCuc--GUCgaCUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 569 0.69 0.60975
Target:  5'- gUgGCCUCCcAGGAGaggGGCcGggGGCg -3'
miRNA:   3'- gGgCGGAGGcUCCUCg--UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 1272 0.78 0.212243
Target:  5'- cCCCGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGGCGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 1434 0.67 0.727353
Target:  5'- cUCCGCCcCCGAGGccccCAGg-GGAGGCc -3'
miRNA:   3'- -GGGCGGaGGCUCCuc--GUCgaCUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 1500 0.69 0.60975
Target:  5'- gUgGCCUCCcAGGAGaggGGCcGggGGCg -3'
miRNA:   3'- gGgCGGAGGcUCCUCg--UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 2204 0.78 0.212243
Target:  5'- cCCCGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGGCGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 2366 0.67 0.727353
Target:  5'- cUCCGCCcCCGAGGccccCAGg-GGAGGCc -3'
miRNA:   3'- -GGGCGGaGGCUCCuc--GUCgaCUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 2432 0.69 0.60975
Target:  5'- gUgGCCUCCcAGGAGaggGGCcGggGGCg -3'
miRNA:   3'- gGgCGGAGGcUCCUCg--UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 3136 0.78 0.212243
Target:  5'- cCCCGCCaaCG-GGAGCAGaggGAGGGCg -3'
miRNA:   3'- -GGGCGGagGCuCCUCGUCga-CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 3298 0.67 0.727353
Target:  5'- cUCCGCCcCCGAGGccccCAGg-GGAGGCc -3'
miRNA:   3'- -GGGCGGaGGCUCCuc--GUCgaCUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 3364 0.69 0.60975
Target:  5'- gUgGCCUCCcAGGAGaggGGCcGggGGCg -3'
miRNA:   3'- gGgCGGAGGcUCCUCg--UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 4660 0.73 0.405827
Target:  5'- cCCCGCCguccugggCCGGGuGGGCgaGGC-GggGGCa -3'
miRNA:   3'- -GGGCGGa-------GGCUC-CUCG--UCGaCuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 7288 0.69 0.639432
Target:  5'- cCCaCGCCuUCCGGGGAGaGGCcucaacuGGGCa -3'
miRNA:   3'- -GG-GCGG-AGGCUCCUCgUCGacu----UCCG- -5'
28782 3' -59.3 NC_006146.1 + 7702 0.66 0.817466
Target:  5'- gCCCGgcuCCUCUGAGGGGCAGaagccaagccaCUGcccGGUc -3'
miRNA:   3'- -GGGC---GGAGGCUCCUCGUC-----------GACuu-CCG- -5'
28782 3' -59.3 NC_006146.1 + 8296 0.73 0.405827
Target:  5'- aCCGCCUCCGAGucuuGCauacAGCUGAuuaGGGUc -3'
miRNA:   3'- gGGCGGAGGCUCcu--CG----UCGACU---UCCG- -5'
28782 3' -59.3 NC_006146.1 + 9930 0.68 0.717782
Target:  5'- gCCCGCga--GcAGGAGCAGCUGAGcgaaaagccuGGCc -3'
miRNA:   3'- -GGGCGgaggC-UCCUCGUCGACUU----------CCG- -5'
28782 3' -59.3 NC_006146.1 + 11129 0.68 0.708142
Target:  5'- cCCCucgGCCUaCCuGGGGGCGGUgguggucacGGAGGCa -3'
miRNA:   3'- -GGG---CGGA-GGcUCCUCGUCGa--------CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 11257 0.69 0.659204
Target:  5'- uCCCGCUguaCGAcaaGGAGguGUucccgGAAGGCg -3'
miRNA:   3'- -GGGCGGag-GCU---CCUCguCGa----CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 13071 0.67 0.755571
Target:  5'- gCCCGuccCCUCCGGGGc-CAGCgcGGAGGa -3'
miRNA:   3'- -GGGC---GGAGGCUCCucGUCGa-CUUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.