miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 3' -59.3 NC_006146.1 + 137540 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 151458 0.66 0.817466
Target:  5'- -aCGCCUggaggcggacCCGAGGGGCu-CUGggGcGCc -3'
miRNA:   3'- ggGCGGA----------GGCUCCUCGucGACuuC-CG- -5'
28782 3' -59.3 NC_006146.1 + 148380 0.66 0.817466
Target:  5'- -aCGCCUggaggcggacCCGAGGGGCu-CUGggGcGCc -3'
miRNA:   3'- ggGCGGA----------GGCUCCUCGucGACuuC-CG- -5'
28782 3' -59.3 NC_006146.1 + 145302 0.66 0.817466
Target:  5'- -aCGCCUggaggcggacCCGAGGGGCu-CUGggGcGCc -3'
miRNA:   3'- ggGCGGA----------GGCUCCUCGucGACuuC-CG- -5'
28782 3' -59.3 NC_006146.1 + 142224 0.66 0.817466
Target:  5'- -aCGCCUggaggcggacCCGAGGGGCu-CUGggGcGCc -3'
miRNA:   3'- ggGCGGA----------GGCUCCUCGucGACuuC-CG- -5'
28782 3' -59.3 NC_006146.1 + 21633 0.66 0.817466
Target:  5'- aCCCgGCCUaCGcGGAGCGGCac--GGCa -3'
miRNA:   3'- -GGG-CGGAgGCuCCUCGUCGacuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 7702 0.66 0.817466
Target:  5'- gCCCGgcuCCUCUGAGGGGCAGaagccaagccaCUGcccGGUc -3'
miRNA:   3'- -GGGC---GGAGGCUCCUCGUC-----------GACuu-CCG- -5'
28782 3' -59.3 NC_006146.1 + 108495 0.66 0.81663
Target:  5'- cCUgGCCUCCGAcGAgguccucuuccucGCgAGCUGAAcGGCc -3'
miRNA:   3'- -GGgCGGAGGCUcCU-------------CG-UCGACUU-CCG- -5'
28782 3' -59.3 NC_006146.1 + 112561 0.66 0.809035
Target:  5'- aCCCGgggUCgUGAGGAuGCAGCUGGccaGGGUg -3'
miRNA:   3'- -GGGCgg-AG-GCUCCU-CGUCGACU---UCCG- -5'
28782 3' -59.3 NC_006146.1 + 154536 0.66 0.817466
Target:  5'- -aCGCCUggaggcggacCCGAGGGGCu-CUGggGcGCc -3'
miRNA:   3'- ggGCGGA----------GGCUCCUCGucGACuuC-CG- -5'
28782 3' -59.3 NC_006146.1 + 157614 0.66 0.817466
Target:  5'- -aCGCCUggaggcggacCCGAGGGGCu-CUGggGcGCc -3'
miRNA:   3'- ggGCGGA----------GGCUCCUCGucGACuuC-CG- -5'
28782 3' -59.3 NC_006146.1 + 47495 0.66 0.82245
Target:  5'- aCCGUCggcuaccccaaggCCGGGGAcuacagcgGCAGUgucGggGGCg -3'
miRNA:   3'- gGGCGGa------------GGCUCCU--------CGUCGa--CuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 111878 0.66 0.82574
Target:  5'- aCCGCCagCGGuGcguucaccaGGCAGCgcgGGAGGCa -3'
miRNA:   3'- gGGCGGagGCUcC---------UCGUCGa--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 156704 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 153627 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 150549 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 147471 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 144393 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 141315 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 88558 0.66 0.824098
Target:  5'- aUCCGUggugCUCCGuaacccggauauGGAGCuGgUGggGGCu -3'
miRNA:   3'- -GGGCG----GAGGCu-----------CCUCGuCgACuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.