Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28783 | 3' | -60.4 | NC_006146.1 | + | 51756 | 0.66 | 0.752465 |
Target: 5'- aGCCcgacacgcguaaaagGUGGCCUCUCUGCCCaGAGc-CGa -3' miRNA: 3'- gCGG---------------UAUCGGGGGGACGGG-CUCaaGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 52848 | 0.71 | 0.443647 |
Target: 5'- aGCCGccGCCgCCCCcGCCCGGGggCu -3' miRNA: 3'- gCGGUauCGG-GGGGaCGGGCUCaaGc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 60027 | 0.66 | 0.758 |
Target: 5'- cCGCCu--GCgCCCgaGCCCGAGa--- -3' miRNA: 3'- -GCGGuauCGgGGGgaCGGGCUCaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 71505 | 0.66 | 0.748756 |
Target: 5'- uGCCGgcaCCCCCCUGgCCGAc-UCGc -3' miRNA: 3'- gCGGUaucGGGGGGACgGGCUcaAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 84814 | 0.67 | 0.720486 |
Target: 5'- aGCUcgagAGCCCCCCUGCCUa------ -3' miRNA: 3'- gCGGua--UCGGGGGGACGGGcucaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 89046 | 0.68 | 0.622902 |
Target: 5'- gGCCGaGGCUCCCaguaGCCCGGGUaUGg -3' miRNA: 3'- gCGGUaUCGGGGGga--CGGGCUCAaGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 99032 | 0.74 | 0.310596 |
Target: 5'- gGCCGUguagaGGCCCCCCaggGCCCGGcGggugUCGg -3' miRNA: 3'- gCGGUA-----UCGGGGGGa--CGGGCU-Ca---AGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 99900 | 0.67 | 0.705137 |
Target: 5'- gCGCCucuGCCCCCCgggcgcaagagcggGCuCCGGG-UCGc -3' miRNA: 3'- -GCGGuauCGGGGGGa-------------CG-GGCUCaAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 103522 | 0.68 | 0.622902 |
Target: 5'- cCGCaCcgAGCCCCCCUcCCCGuacUCGu -3' miRNA: 3'- -GCG-GuaUCGGGGGGAcGGGCucaAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 106596 | 0.72 | 0.43496 |
Target: 5'- cCGCCAguacGGCCCCag-GCCCGuGUUUGu -3' miRNA: 3'- -GCGGUa---UCGGGGggaCGGGCuCAAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 109899 | 0.68 | 0.632752 |
Target: 5'- gGCCGUGGCCUCCagaaaCUGCCUGAu---- -3' miRNA: 3'- gCGGUAUCGGGGG-----GACGGGCUcaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 113685 | 0.7 | 0.544879 |
Target: 5'- gGCCcgGGCCCggccUCCgGCCCGGGgaCGg -3' miRNA: 3'- gCGGuaUCGGG----GGGaCGGGCUCaaGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 119063 | 0.68 | 0.612075 |
Target: 5'- gGCCAggccccgAGCCCCCCUccacgccGCcCCGGGgaaCGg -3' miRNA: 3'- gCGGUa------UCGGGGGGA-------CG-GGCUCaa-GC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 121236 | 1.09 | 0.001379 |
Target: 5'- cCGCCAUAGCCCCCCUGCCCGAGUUCGa -3' miRNA: 3'- -GCGGUAUCGGGGGGACGGGCUCAAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 124729 | 0.67 | 0.701275 |
Target: 5'- gGCCGcucucUGGCCCCa---CCCGAGUUCc -3' miRNA: 3'- gCGGU-----AUCGGGGggacGGGCUCAAGc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 127541 | 0.66 | 0.729991 |
Target: 5'- cCGCUA-AGCcaCCCCCUGCCaCGGGcugCGc -3' miRNA: 3'- -GCGGUaUCG--GGGGGACGG-GCUCaa-GC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 129052 | 0.68 | 0.632752 |
Target: 5'- gGCCccgGUAGCCCCuggCCacgGCCCGGGUg-- -3' miRNA: 3'- gCGG---UAUCGGGG---GGa--CGGGCUCAagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 130164 | 0.68 | 0.640632 |
Target: 5'- gGCCAgccccaagcacgGGCCCgCCUGCCCGGa---- -3' miRNA: 3'- gCGGUa-----------UCGGGgGGACGGGCUcaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 130419 | 0.67 | 0.701275 |
Target: 5'- uGCCuuucgcGGCCCCUCUGCCCcccUUCa -3' miRNA: 3'- gCGGua----UCGGGGGGACGGGcucAAGc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 131870 | 0.68 | 0.613059 |
Target: 5'- uGCCugcUGGCCCCCaUGUuuGGGUUgCGa -3' miRNA: 3'- gCGGu--AUCGGGGGgACGggCUCAA-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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