miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 3' -60.4 NC_006146.1 + 911 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 1843 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 2775 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 3707 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 3738 0.68 0.613059
Target:  5'- gGCCgcGUGGCCCUUCaGCCCGGGg--- -3'
miRNA:   3'- gCGG--UAUCGGGGGGaCGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 20939 0.66 0.748756
Target:  5'- gGCCcUGGCCCCCaCUcccacGCCUGGGcgCc -3'
miRNA:   3'- gCGGuAUCGGGGG-GA-----CGGGCUCaaGc -5'
28783 3' -60.4 NC_006146.1 + 23926 0.7 0.497695
Target:  5'- gCGCCc-AGCCCCuCCUGCCCcaAGggCGg -3'
miRNA:   3'- -GCGGuaUCGGGG-GGACGGGc-UCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 24228 0.66 0.748756
Target:  5'- gGCCGgGGCCgCCCaccGCCCGGGa--- -3'
miRNA:   3'- gCGGUaUCGGgGGGa--CGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 24883 0.74 0.324559
Target:  5'- uGCCAggagcuGCCCCCCUGCCCc---UCGg -3'
miRNA:   3'- gCGGUau----CGGGGGGACGGGcucaAGC- -5'
28783 3' -60.4 NC_006146.1 + 30282 0.71 0.45243
Target:  5'- gCGCCGUGGUCCCCU--CCUGGGcUUCGc -3'
miRNA:   3'- -GCGGUAUCGGGGGGacGGGCUC-AAGC- -5'
28783 3' -60.4 NC_006146.1 + 33057 0.68 0.660306
Target:  5'- aCGCCcacccaccccgAGCCCCCCUGCCUuccaGGUgcacCGg -3'
miRNA:   3'- -GCGGua---------UCGGGGGGACGGGc---UCAa---GC- -5'
28783 3' -60.4 NC_006146.1 + 33309 0.66 0.748756
Target:  5'- gGCacccGGCCCCCg-GCCCGAGcUCc -3'
miRNA:   3'- gCGgua-UCGGGGGgaCGGGCUCaAGc -5'
28783 3' -60.4 NC_006146.1 + 42160 0.73 0.377048
Target:  5'- gGCC-UGGCacggacucacCCCCCUGCCCGAGa--- -3'
miRNA:   3'- gCGGuAUCG----------GGGGGACGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 42421 0.68 0.642601
Target:  5'- cCGCCGUGGgCCCCCUGgCCuacaAGUg-- -3'
miRNA:   3'- -GCGGUAUCgGGGGGACgGGc---UCAagc -5'
28783 3' -60.4 NC_006146.1 + 42697 0.66 0.748756
Target:  5'- gGCUGgcagAGCCCCCCagcGCCCGc--UCGg -3'
miRNA:   3'- gCGGUa---UCGGGGGGa--CGGGCucaAGC- -5'
28783 3' -60.4 NC_006146.1 + 42711 0.67 0.720486
Target:  5'- gCGCCGcggcGCCCCCCUGggccgccuCCCGGcgUCGc -3'
miRNA:   3'- -GCGGUau--CGGGGGGAC--------GGGCUcaAGC- -5'
28783 3' -60.4 NC_006146.1 + 44373 0.66 0.739417
Target:  5'- uGCCAga--CCCCC-GCCCGGGgggCGu -3'
miRNA:   3'- gCGGUaucgGGGGGaCGGGCUCaa-GC- -5'
28783 3' -60.4 NC_006146.1 + 44712 0.73 0.384998
Target:  5'- gGCCGUGGCCCCCgCUGgCCGGc---- -3'
miRNA:   3'- gCGGUAUCGGGGG-GACgGGCUcaagc -5'
28783 3' -60.4 NC_006146.1 + 44833 0.66 0.758
Target:  5'- gGCCGgcGCCCCUCgUGCCCGuuUa-- -3'
miRNA:   3'- gCGGUauCGGGGGG-ACGGGCucAagc -5'
28783 3' -60.4 NC_006146.1 + 47254 0.68 0.613059
Target:  5'- uCGaCGUGGCCCCUg-GCCCGGGUgaCGa -3'
miRNA:   3'- -GCgGUAUCGGGGGgaCGGGCUCAa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.