Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28783 | 3' | -60.4 | NC_006146.1 | + | 121236 | 1.09 | 0.001379 |
Target: 5'- cCGCCAUAGCCCCCCUGCCCGAGUUCGa -3' miRNA: 3'- -GCGGUAUCGGGGGGACGGGCUCAAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 156142 | 0.78 | 0.186455 |
Target: 5'- uGCCcgAGCCCCgCCUGCCUGAccucGUUCu -3' miRNA: 3'- gCGGuaUCGGGG-GGACGGGCU----CAAGc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 99032 | 0.74 | 0.310596 |
Target: 5'- gGCCGUguagaGGCCCCCCaggGCCCGGcGggugUCGg -3' miRNA: 3'- gCGGUA-----UCGGGGGGa--CGGGCU-Ca---AGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 24883 | 0.74 | 0.324559 |
Target: 5'- uGCCAggagcuGCCCCCCUGCCCc---UCGg -3' miRNA: 3'- gCGGUau----CGGGGGGACGGGcucaAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 42160 | 0.73 | 0.377048 |
Target: 5'- gGCC-UGGCacggacucacCCCCCUGCCCGAGa--- -3' miRNA: 3'- gCGGuAUCG----------GGGGGACGGGCUCaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 44712 | 0.73 | 0.384998 |
Target: 5'- gGCCGUGGCCCCCgCUGgCCGGc---- -3' miRNA: 3'- gCGGUAUCGGGGG-GACgGGCUcaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 106596 | 0.72 | 0.43496 |
Target: 5'- cCGCCAguacGGCCCCag-GCCCGuGUUUGu -3' miRNA: 3'- -GCGGUa---UCGGGGggaCGGGCuCAAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 52848 | 0.71 | 0.443647 |
Target: 5'- aGCCGccGCCgCCCCcGCCCGGGggCu -3' miRNA: 3'- gCGGUauCGG-GGGGaCGGGCUCaaGc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 30282 | 0.71 | 0.45243 |
Target: 5'- gCGCCGUGGUCCCCU--CCUGGGcUUCGc -3' miRNA: 3'- -GCGGUAUCGGGGGGacGGGCUC-AAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 23926 | 0.7 | 0.497695 |
Target: 5'- gCGCCc-AGCCCCuCCUGCCCcaAGggCGg -3' miRNA: 3'- -GCGGuaUCGGGG-GGACGGGc-UCaaGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 113685 | 0.7 | 0.544879 |
Target: 5'- gGCCcgGGCCCggccUCCgGCCCGGGgaCGg -3' miRNA: 3'- gCGGuaUCGGG----GGGaCGGGCUCaaGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 144377 | 0.69 | 0.573882 |
Target: 5'- aCGCUGUGGCUgUCUUGCCUGGGUgugUGg -3' miRNA: 3'- -GCGGUAUCGGgGGGACGGGCUCAa--GC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 140766 | 0.69 | 0.583634 |
Target: 5'- gGCCAUGcccaCCCCCCUGCauGGGggCGc -3' miRNA: 3'- gCGGUAUc---GGGGGGACGggCUCaaGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 137608 | 0.69 | 0.603228 |
Target: 5'- gGCCGgguGCCCCUggGUCCGcuGGUUCGg -3' miRNA: 3'- gCGGUau-CGGGGGgaCGGGC--UCAAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 119063 | 0.68 | 0.612075 |
Target: 5'- gGCCAggccccgAGCCCCCCUccacgccGCcCCGGGgaaCGg -3' miRNA: 3'- gCGGUa------UCGGGGGGA-------CG-GGCUCaa-GC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 3738 | 0.68 | 0.613059 |
Target: 5'- gGCCgcGUGGCCCUUCaGCCCGGGg--- -3' miRNA: 3'- gCGG--UAUCGGGGGGaCGGGCUCaagc -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 47254 | 0.68 | 0.613059 |
Target: 5'- uCGaCGUGGCCCCUg-GCCCGGGUgaCGa -3' miRNA: 3'- -GCgGUAUCGGGGGgaCGGGCUCAa-GC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 131870 | 0.68 | 0.613059 |
Target: 5'- uGCCugcUGGCCCCCaUGUuuGGGUUgCGa -3' miRNA: 3'- gCGGu--AUCGGGGGgACGggCUCAA-GC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 103522 | 0.68 | 0.622902 |
Target: 5'- cCGCaCcgAGCCCCCCUcCCCGuacUCGu -3' miRNA: 3'- -GCG-GuaUCGGGGGGAcGGGCucaAGC- -5' |
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28783 | 3' | -60.4 | NC_006146.1 | + | 89046 | 0.68 | 0.622902 |
Target: 5'- gGCCGaGGCUCCCaguaGCCCGGGUaUGg -3' miRNA: 3'- gCGGUaUCGGGGGga--CGGGCUCAaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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