miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 3' -60.4 NC_006146.1 + 156142 0.78 0.186455
Target:  5'- uGCCcgAGCCCCgCCUGCCUGAccucGUUCu -3'
miRNA:   3'- gCGGuaUCGGGG-GGACGGGCU----CAAGc -5'
28783 3' -60.4 NC_006146.1 + 170391 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 159034 0.66 0.729991
Target:  5'- uGCCAgucaacgucgGGCCCgCCCcaaGCCCGAGa--- -3'
miRNA:   3'- gCGGUa---------UCGGG-GGGa--CGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 169561 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 52848 0.71 0.443647
Target:  5'- aGCCGccGCCgCCCCcGCCCGGGggCu -3'
miRNA:   3'- gCGGUauCGG-GGGGaCGGGCUCaaGc -5'
28783 3' -60.4 NC_006146.1 + 113685 0.7 0.544879
Target:  5'- gGCCcgGGCCCggccUCCgGCCCGGGgaCGg -3'
miRNA:   3'- gCGGuaUCGGG----GGGaCGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 140766 0.69 0.583634
Target:  5'- gGCCAUGcccaCCCCCCUGCauGGGggCGc -3'
miRNA:   3'- gCGGUAUc---GGGGGGACGggCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 137608 0.69 0.603228
Target:  5'- gGCCGgguGCCCCUggGUCCGcuGGUUCGg -3'
miRNA:   3'- gCGGUau-CGGGGGgaCGGGC--UCAAGC- -5'
28783 3' -60.4 NC_006146.1 + 42421 0.68 0.642601
Target:  5'- cCGCCGUGGgCCCCCUGgCCuacaAGUg-- -3'
miRNA:   3'- -GCGGUAUCgGGGGGACgGGc---UCAagc -5'
28783 3' -60.4 NC_006146.1 + 169460 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 130419 0.67 0.701275
Target:  5'- uGCCuuucgcGGCCCCUCUGCCCcccUUCa -3'
miRNA:   3'- gCGGua----UCGGGGGGACGGGcucAAGc -5'
28783 3' -60.4 NC_006146.1 + 47254 0.68 0.613059
Target:  5'- uCGaCGUGGCCCCUg-GCCCGGGUgaCGa -3'
miRNA:   3'- -GCgGUAUCGGGGGgaCGGGCUCAa-GC- -5'
28783 3' -60.4 NC_006146.1 + 99032 0.74 0.310596
Target:  5'- gGCCGUguagaGGCCCCCCaggGCCCGGcGggugUCGg -3'
miRNA:   3'- gCGGUA-----UCGGGGGGa--CGGGCU-Ca---AGC- -5'
28783 3' -60.4 NC_006146.1 + 167596 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 44712 0.73 0.384998
Target:  5'- gGCCGUGGCCCCCgCUGgCCGGc---- -3'
miRNA:   3'- gCGGUAUCGGGGG-GACgGGCUcaagc -5'
28783 3' -60.4 NC_006146.1 + 3738 0.68 0.613059
Target:  5'- gGCCgcGUGGCCCUUCaGCCCGGGg--- -3'
miRNA:   3'- gCGG--UAUCGGGGGGaCGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 168528 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 99900 0.67 0.705137
Target:  5'- gCGCCucuGCCCCCCgggcgcaagagcggGCuCCGGG-UCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGa-------------CG-GGCUCaAGC- -5'
28783 3' -60.4 NC_006146.1 + 106596 0.72 0.43496
Target:  5'- cCGCCAguacGGCCCCag-GCCCGuGUUUGu -3'
miRNA:   3'- -GCGGUa---UCGGGGggaCGGGCuCAAGC- -5'
28783 3' -60.4 NC_006146.1 + 144377 0.69 0.573882
Target:  5'- aCGCUGUGGCUgUCUUGCCUGGGUgugUGg -3'
miRNA:   3'- -GCGGUAUCGGgGGGACGGGCUCAa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.