miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 3' -60.4 NC_006146.1 + 60027 0.66 0.758
Target:  5'- cCGCCu--GCgCCCgaGCCCGAGa--- -3'
miRNA:   3'- -GCGGuauCGgGGGgaCGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 137608 0.69 0.603228
Target:  5'- gGCCGgguGCCCCUggGUCCGcuGGUUCGg -3'
miRNA:   3'- gCGGUau-CGGGGGgaCGGGC--UCAAGC- -5'
28783 3' -60.4 NC_006146.1 + 170391 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 137973 0.66 0.739417
Target:  5'- gGCCG-GGCCUCCCggggGCCCGgcGGggUGg -3'
miRNA:   3'- gCGGUaUCGGGGGGa---CGGGC--UCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 167696 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 167596 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 99900 0.67 0.705137
Target:  5'- gCGCCucuGCCCCCCgggcgcaagagcggGCuCCGGG-UCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGa-------------CG-GGCUCaAGC- -5'
28783 3' -60.4 NC_006146.1 + 121236 1.09 0.001379
Target:  5'- cCGCCAUAGCCCCCCUGCCCGAGUUCGa -3'
miRNA:   3'- -GCGGUAUCGGGGGGACGGGCUCAAGC- -5'
28783 3' -60.4 NC_006146.1 + 2775 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 33057 0.68 0.660306
Target:  5'- aCGCCcacccaccccgAGCCCCCCUGCCUuccaGGUgcacCGg -3'
miRNA:   3'- -GCGGua---------UCGGGGGGACGGGc---UCAa---GC- -5'
28783 3' -60.4 NC_006146.1 + 124729 0.67 0.701275
Target:  5'- gGCCGcucucUGGCCCCa---CCCGAGUUCc -3'
miRNA:   3'- gCGGU-----AUCGGGGggacGGGCUCAAGc -5'
28783 3' -60.4 NC_006146.1 + 51756 0.66 0.752465
Target:  5'- aGCCcgacacgcguaaaagGUGGCCUCUCUGCCCaGAGc-CGa -3'
miRNA:   3'- gCGG---------------UAUCGGGGGGACGGG-CUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 119063 0.68 0.612075
Target:  5'- gGCCAggccccgAGCCCCCCUccacgccGCcCCGGGgaaCGg -3'
miRNA:   3'- gCGGUa------UCGGGGGGA-------CG-GGCUCaa-GC- -5'
28783 3' -60.4 NC_006146.1 + 71505 0.66 0.748756
Target:  5'- uGCCGgcaCCCCCCUGgCCGAc-UCGc -3'
miRNA:   3'- gCGGUaucGGGGGGACgGGCUcaAGC- -5'
28783 3' -60.4 NC_006146.1 + 23926 0.7 0.497695
Target:  5'- gCGCCc-AGCCCCuCCUGCCCcaAGggCGg -3'
miRNA:   3'- -GCGGuaUCGGGG-GGACGGGc-UCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 30282 0.71 0.45243
Target:  5'- gCGCCGUGGUCCCCU--CCUGGGcUUCGc -3'
miRNA:   3'- -GCGGUAUCGGGGGGacGGGCUC-AAGC- -5'
28783 3' -60.4 NC_006146.1 + 42160 0.73 0.377048
Target:  5'- gGCC-UGGCacggacucacCCCCCUGCCCGAGa--- -3'
miRNA:   3'- gCGGuAUCG----------GGGGGACGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 24883 0.74 0.324559
Target:  5'- uGCCAggagcuGCCCCCCUGCCCc---UCGg -3'
miRNA:   3'- gCGGUau----CGGGGGGACGGGcucaAGC- -5'
28783 3' -60.4 NC_006146.1 + 42711 0.67 0.720486
Target:  5'- gCGCCGcggcGCCCCCCUGggccgccuCCCGGcgUCGc -3'
miRNA:   3'- -GCGGUau--CGGGGGGAC--------GGGCUcaAGC- -5'
28783 3' -60.4 NC_006146.1 + 84814 0.67 0.720486
Target:  5'- aGCUcgagAGCCCCCCUGCCUa------ -3'
miRNA:   3'- gCGGua--UCGGGGGGACGGGcucaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.