miRNA display CGI


Results 21 - 40 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 5' -49.8 NC_006146.1 + 21908 0.71 0.94243
Target:  5'- cGCCGAGGAGgAGGggcgGGGAaGCUggcaGAGGCc -3'
miRNA:   3'- -CGGCUUUUCgUCU----UUCU-CGAg---CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 21977 0.71 0.94243
Target:  5'- aGCCGAGAAGUGGcGGGGAaGCUgGuggaGGGCa -3'
miRNA:   3'- -CGGCUUUUCGUC-UUUCU-CGAgC----UCCG- -5'
28783 5' -49.8 NC_006146.1 + 22230 0.7 0.975296
Target:  5'- cCCGggGAGUGGAGGGGGaUCGcccGGGUc -3'
miRNA:   3'- cGGCuuUUCGUCUUUCUCgAGC---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 23982 0.68 0.989205
Target:  5'- aGCCGGAGAGgGGGcgaaagAGGAcGCgCGAGGa -3'
miRNA:   3'- -CGGCUUUUCgUCU------UUCU-CGaGCUCCg -5'
28783 5' -49.8 NC_006146.1 + 24184 0.68 0.991636
Target:  5'- cGUgGAcAGGGCAGAgGAGGGCUgggccugCGAGGUu -3'
miRNA:   3'- -CGgCU-UUUCGUCU-UUCUCGA-------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 24777 0.67 0.995412
Target:  5'- cGCUGAAAAacCAGAGAcGAGCUucgUGAGGg -3'
miRNA:   3'- -CGGCUUUUc-GUCUUU-CUCGA---GCUCCg -5'
28783 5' -49.8 NC_006146.1 + 25308 0.7 0.975296
Target:  5'- cCCGggGAGUGGAGGGGGaUCGcccGGGUc -3'
miRNA:   3'- cGGCuuUUCGUCUUUCUCgAGC---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 26084 0.67 0.994653
Target:  5'- gGCCGGAAacAGcCGGGAGGGGaggcacgGAGGCc -3'
miRNA:   3'- -CGGCUUU--UC-GUCUUUCUCgag----CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 26140 0.71 0.951406
Target:  5'- aCCGggGcccGGuCGGAAAGAGCaCGGGGg -3'
miRNA:   3'- cGGCuuU---UC-GUCUUUCUCGaGCUCCg -5'
28783 5' -49.8 NC_006146.1 + 27364 0.71 0.947043
Target:  5'- gGCCGggGGGCgucuGGAcAGcAGCaacCGGGGCa -3'
miRNA:   3'- -CGGCuuUUCG----UCUuUC-UCGa--GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 28041 0.76 0.786575
Target:  5'- aGCCGGAGGGCAGGuggcugcaauagccAAGcacgccaugGGCuUCGGGGCa -3'
miRNA:   3'- -CGGCUUUUCGUCU--------------UUC---------UCG-AGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 28233 0.76 0.747461
Target:  5'- aGCCGGAGGGCAGGuggcugcgauagccGAGcacgccaugGGCuUCGGGGCa -3'
miRNA:   3'- -CGGCUUUUCGUCU--------------UUC---------UCG-AGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 28386 0.7 0.975296
Target:  5'- cCCGggGAGUGGAGGGGGaUCGcccGGGUc -3'
miRNA:   3'- cGGCuuUUCGUCUUUCUCgAGC---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 29083 0.68 0.989205
Target:  5'- gGCCcacAAAAGCAGAggugugcaGAGGGCacagaGGGGCa -3'
miRNA:   3'- -CGGc--UUUUCGUCU--------UUCUCGag---CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 29345 0.66 0.997625
Target:  5'- aCCaAGGAaCAGAGGGGGCUgaggggUGAGGCg -3'
miRNA:   3'- cGGcUUUUcGUCUUUCUCGA------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 32008 0.66 0.99801
Target:  5'- cGCUaGGAGGaCAGAGGGgccucGGgaCGAGGCg -3'
miRNA:   3'- -CGGcUUUUC-GUCUUUC-----UCgaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 32146 0.68 0.990545
Target:  5'- uGCUGggGuGgGGGAuGGGCUC-AGGCa -3'
miRNA:   3'- -CGGCuuUuCgUCUUuCUCGAGcUCCG- -5'
28783 5' -49.8 NC_006146.1 + 32334 0.69 0.986086
Target:  5'- -aCGAAGGG-AGGAAGGGUggcgcaccUCGAGGUa -3'
miRNA:   3'- cgGCUUUUCgUCUUUCUCG--------AGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 33153 0.67 0.995412
Target:  5'- aGCgGAcGAGCGGAcccccAGGAGCUCcagaaccGGGUa -3'
miRNA:   3'- -CGgCUuUUCGUCU-----UUCUCGAGc------UCCG- -5'
28783 5' -49.8 NC_006146.1 + 33214 0.68 0.990545
Target:  5'- gGCCGGAggggGAGCcgGGAuGGGGCU-GGGGUu -3'
miRNA:   3'- -CGGCUU----UUCG--UCUuUCUCGAgCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.