miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 5' -49.8 NC_006146.1 + 1185 0.68 0.99175
Target:  5'- cGCCGAucuGAGCgcccacccgugAGggGGAGCcCGggaagacccggGGGCg -3'
miRNA:   3'- -CGGCUu--UUCG-----------UCuuUCUCGaGC-----------UCCG- -5'
28783 5' -49.8 NC_006146.1 + 2117 0.68 0.99175
Target:  5'- cGCCGAucuGAGCgcccacccgugAGggGGAGCcCGggaagacccggGGGCg -3'
miRNA:   3'- -CGGCUu--UUCG-----------UCuuUCUCGaGC-----------UCCG- -5'
28783 5' -49.8 NC_006146.1 + 3049 0.68 0.99175
Target:  5'- cGCCGAucuGAGCgcccacccgugAGggGGAGCcCGggaagacccggGGGCg -3'
miRNA:   3'- -CGGCUu--UUCG-----------UCuuUCUCGaGC-----------UCCG- -5'
28783 5' -49.8 NC_006146.1 + 3780 0.66 0.998624
Target:  5'- cGCgGggGGGgGGggGGGGgg-GGGGCa -3'
miRNA:   3'- -CGgCuuUUCgUCuuUCUCgagCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 4673 0.71 0.959394
Target:  5'- gGCCGGgugggcgaggcgGGGGCAGAucAGAuGUUUGAGGUg -3'
miRNA:   3'- -CGGCU------------UUUCGUCUu-UCU-CGAGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 5188 0.67 0.994653
Target:  5'- cCCGAGAcguuuucccugGGCcuGggGGAGCUaGGGGUg -3'
miRNA:   3'- cGGCUUU-----------UCGu-CuuUCUCGAgCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 8433 0.72 0.93244
Target:  5'- cCUGggGAcCAG-GAGAGCUCGGGGg -3'
miRNA:   3'- cGGCuuUUcGUCuUUCUCGAGCUCCg -5'
28783 5' -49.8 NC_006146.1 + 11845 0.68 0.989205
Target:  5'- cGCCGGGcccuGCuucucGGGCUUGGGGCg -3'
miRNA:   3'- -CGGCUUuu--CGucuuuCUCGAGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 11990 0.69 0.98017
Target:  5'- uGCC-AGGGGCAG-AAGAGCUCGcugacuccGGUg -3'
miRNA:   3'- -CGGcUUUUCGUCuUUCUCGAGCu-------CCG- -5'
28783 5' -49.8 NC_006146.1 + 12996 0.7 0.975296
Target:  5'- cCCGggGAGUGGAGGGGGaUCGcccGGGUc -3'
miRNA:   3'- cGGCuuUUCGUCUUUCUCgAGC---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 14017 0.77 0.699329
Target:  5'- uGCUGGAAGGCGGAGggcagGGAGCaggCGGGGg -3'
miRNA:   3'- -CGGCUUUUCGUCUU-----UCUCGa--GCUCCg -5'
28783 5' -49.8 NC_006146.1 + 14530 0.7 0.97227
Target:  5'- gGCUGGAGAGCcuGGAccgggcccuGGAGCugcugggccgcuuUCGGGGCg -3'
miRNA:   3'- -CGGCUUUUCGu-CUU---------UCUCG-------------AGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 14758 0.76 0.770206
Target:  5'- -aCGAGgucAGGCAGgcGGGGCUCG-GGCa -3'
miRNA:   3'- cgGCUU---UUCGUCuuUCUCGAGCuCCG- -5'
28783 5' -49.8 NC_006146.1 + 14821 0.68 0.989205
Target:  5'- gGCCGGAGgagGGCAcGGucucGGGCcCGGGGCc -3'
miRNA:   3'- -CGGCUUU---UCGU-CUuu--CUCGaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 14861 0.67 0.996667
Target:  5'- gGCCGAgGGGGCAGccAGGGAGCUgGAc-- -3'
miRNA:   3'- -CGGCU-UUUCGUC--UUUCUCGAgCUccg -5'
28783 5' -49.8 NC_006146.1 + 15297 0.71 0.947043
Target:  5'- -gCGAGGGGgAGGAGGGGC-CgGAGGCc -3'
miRNA:   3'- cgGCUUUUCgUCUUUCUCGaG-CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 15993 0.66 0.99801
Target:  5'- -gCGAAGGGCGGAcgcGGucAGCccgggCGAGGCc -3'
miRNA:   3'- cgGCUUUUCGUCUu--UC--UCGa----GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 16074 0.7 0.975296
Target:  5'- cCCGggGAGUGGAGGGGGaUCGcccGGGUc -3'
miRNA:   3'- cGGCuuUUCGUCUUUCUCgAGC---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 19152 0.7 0.975296
Target:  5'- cCCGggGAGUGGAGGGGGaUCGcccGGGUc -3'
miRNA:   3'- cGGCuuUUCGUCUUUCUCgAGC---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 19947 0.66 0.99801
Target:  5'- gGCCucccuGGGCAGAucagggccGGGGGCgucugCGAGGUc -3'
miRNA:   3'- -CGGcuu--UUCGUCU--------UUCUCGa----GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.