miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 5' -49.8 NC_006146.1 + 157865 0.66 0.998624
Target:  5'- cGCCugGAAAAGUugugccacAGguAGAgGCUCGAGaGCu -3'
miRNA:   3'- -CGG--CUUUUCG--------UCuuUCU-CGAGCUC-CG- -5'
28783 5' -49.8 NC_006146.1 + 95037 0.66 0.99801
Target:  5'- cGCCGAcaaauGGAGCgAGAcauGGGGGCUCccacucgugGuGGCa -3'
miRNA:   3'- -CGGCU-----UUUCG-UCU---UUCUCGAG---------CuCCG- -5'
28783 5' -49.8 NC_006146.1 + 15993 0.66 0.99801
Target:  5'- -gCGAAGGGCGGAcgcGGucAGCccgggCGAGGCc -3'
miRNA:   3'- cgGCUUUUCGUCUu--UC--UCGa----GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 170646 0.66 0.99801
Target:  5'- gGCCGcAAGuAGCAGAgugaGAGAGCa--AGGCc -3'
miRNA:   3'- -CGGC-UUU-UCGUCU----UUCUCGagcUCCG- -5'
28783 5' -49.8 NC_006146.1 + 158361 0.66 0.99801
Target:  5'- gGCgGGGAGGaCAGAGAGGGagggaAGGCa -3'
miRNA:   3'- -CGgCUUUUC-GUCUUUCUCgagc-UCCG- -5'
28783 5' -49.8 NC_006146.1 + 155282 0.66 0.99801
Target:  5'- gGCgGGGAGGaCAGAGAGGGagggaAGGCa -3'
miRNA:   3'- -CGgCUUUUC-GUCUUUCUCgagc-UCCG- -5'
28783 5' -49.8 NC_006146.1 + 152204 0.66 0.99801
Target:  5'- gGCgGGGAGGaCAGAGAGGGagggaAGGCa -3'
miRNA:   3'- -CGgCUUUUC-GUCUUUCUCgagc-UCCG- -5'
28783 5' -49.8 NC_006146.1 + 149126 0.66 0.99801
Target:  5'- gGCgGGGAGGaCAGAGAGGGagggaAGGCa -3'
miRNA:   3'- -CGgCUUUUC-GUCUUUCUCgagc-UCCG- -5'
28783 5' -49.8 NC_006146.1 + 146048 0.66 0.99801
Target:  5'- gGCgGGGAGGaCAGAGAGGGagggaAGGCa -3'
miRNA:   3'- -CGgCUUUUC-GUCUUUCUCgagc-UCCG- -5'
28783 5' -49.8 NC_006146.1 + 76892 0.66 0.998279
Target:  5'- uGCCGGGccGCAcGugGGAGCcagaggugaccgCGGGGCu -3'
miRNA:   3'- -CGGCUUuuCGU-CuuUCUCGa-----------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 112750 0.66 0.99831
Target:  5'- gGUCGAGgcGCAGAAgccggccAGGGCauguaaaaaUGAGGCa -3'
miRNA:   3'- -CGGCUUuuCGUCUU-------UCUCGa--------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 44526 0.66 0.998341
Target:  5'- gGUgGGAuccauGGCAGGAuauccuggaaaaGGGGC-CGGGGCu -3'
miRNA:   3'- -CGgCUUu----UCGUCUU------------UCUCGaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 88971 0.66 0.998624
Target:  5'- uGCUGGGAAuguuGUGGcuGGGGCU-GAGGCu -3'
miRNA:   3'- -CGGCUUUU----CGUCuuUCUCGAgCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 81644 0.66 0.998624
Target:  5'- uGCCGGGAcGUu---GGGGCUCGgaGGGUg -3'
miRNA:   3'- -CGGCUUUuCGucuuUCUCGAGC--UCCG- -5'
28783 5' -49.8 NC_006146.1 + 40666 0.66 0.998624
Target:  5'- cCUGGAGacuGGUGGu--GGGCUCuGAGGCg -3'
miRNA:   3'- cGGCUUU---UCGUCuuuCUCGAG-CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 3780 0.66 0.998624
Target:  5'- cGCgGggGGGgGGggGGGGgg-GGGGCa -3'
miRNA:   3'- -CGgCuuUUCgUCuuUCUCgagCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 127500 0.66 0.998341
Target:  5'- gGCgGggGucGCAGccGGGGCa-GAGGCa -3'
miRNA:   3'- -CGgCuuUu-CGUCuuUCUCGagCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 123341 0.66 0.998341
Target:  5'- gGCCGucAGGGGUcucgccGAGGGAGCUCu-GGCg -3'
miRNA:   3'- -CGGC--UUUUCGu-----CUUUCUCGAGcuCCG- -5'
28783 5' -49.8 NC_006146.1 + 88134 0.66 0.998341
Target:  5'- uGUCGGAAuggGGCGcaAAGGGGCUucaCGAGGUg -3'
miRNA:   3'- -CGGCUUU---UCGUc-UUUCUCGA---GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 59324 0.66 0.998341
Target:  5'- gGCCGAGAGGCuGgcGGuGUU-GAcGGCa -3'
miRNA:   3'- -CGGCUUUUCGuCuuUCuCGAgCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.