miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 5' -49.8 NC_006146.1 + 137835 0.86 0.279799
Target:  5'- cCUGGAAGGCAGggGG-GCUCGGGGUg -3'
miRNA:   3'- cGGCUUUUCGUCuuUCuCGAGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 170166 0.77 0.709717
Target:  5'- cGCCGGccgGGGGCuGAGGGGGCUCccgaGGGCg -3'
miRNA:   3'- -CGGCU---UUUCGuCUUUCUCGAGc---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 51829 0.77 0.730273
Target:  5'- cCCGggGcGGCGuGGAggGGGGCUCGGGGCc -3'
miRNA:   3'- cGGCuuU-UCGU-CUU--UCUCGAGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 157865 0.66 0.998624
Target:  5'- cGCCugGAAAAGUugugccacAGguAGAgGCUCGAGaGCu -3'
miRNA:   3'- -CGG--CUUUUCG--------UCuuUCU-CGAGCUC-CG- -5'
28783 5' -49.8 NC_006146.1 + 95451 0.82 0.480979
Target:  5'- aGCCGAGAagGGCAGGAaggGGGGCUCuGAGaGCu -3'
miRNA:   3'- -CGGCUUU--UCGUCUU---UCUCGAG-CUC-CG- -5'
28783 5' -49.8 NC_006146.1 + 167306 0.81 0.500801
Target:  5'- gGCCGGcgccuGCAGggGGGGCcggCGGGGCg -3'
miRNA:   3'- -CGGCUuuu--CGUCuuUCUCGa--GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 169170 0.81 0.500801
Target:  5'- gGCCGGcgccuGCAGggGGGGCcggCGGGGCg -3'
miRNA:   3'- -CGGCUuuu--CGUCuuUCUCGa--GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 147462 0.81 0.500801
Target:  5'- gGCCGAGAcgGGCAGccGGAGCUUGuGGUa -3'
miRNA:   3'- -CGGCUUU--UCGUCuuUCUCGAGCuCCG- -5'
28783 5' -49.8 NC_006146.1 + 52504 0.79 0.593695
Target:  5'- gGCCGAGuuggagaucuGGGCgGGAAAGAGgaCGAGGCc -3'
miRNA:   3'- -CGGCUU----------UUCG-UCUUUCUCgaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 169235 0.77 0.709717
Target:  5'- cGCCGGccgGGGGCuGAGGGGGCUCccgaGGGCg -3'
miRNA:   3'- -CGGCU---UUUCGuCUUUCUCGAGc---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 60620 0.78 0.666782
Target:  5'- cGCCGAGGccaucauGGCAGAcGGGGCUCuGcAGGCc -3'
miRNA:   3'- -CGGCUUU-------UCGUCUuUCUCGAG-C-UCCG- -5'
28783 5' -49.8 NC_006146.1 + 146016 0.8 0.583157
Target:  5'- aCCGAGGGGCAGggGGgcAGCUCcuGGCa -3'
miRNA:   3'- cGGCUUUUCGUCuuUC--UCGAGcuCCG- -5'
28783 5' -49.8 NC_006146.1 + 85892 0.83 0.423974
Target:  5'- cGCUGGAAcuaGGguGAGAGAGCcgCGGGGCu -3'
miRNA:   3'- -CGGCUUU---UCguCUUUCUCGa-GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 167371 0.77 0.709717
Target:  5'- cGCCGGccgGGGGCuGAGGGGGCUCccgaGGGCg -3'
miRNA:   3'- -CGGCU---UUUCGuCUUUCUCGAGc---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 34005 0.82 0.471211
Target:  5'- cCUGGAAGGCAgGggGGGGgUCGGGGCa -3'
miRNA:   3'- cGGCUUUUCGU-CuuUCUCgAGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 170102 0.81 0.531181
Target:  5'- gGCCGGcgccGCAGggGGGGCcggCGGGGCg -3'
miRNA:   3'- -CGGCUuuu-CGUCuuUCUCGa--GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 168303 0.77 0.709717
Target:  5'- cGCCGGccgGGGGCuGAGGGGGCUCccgaGGGCg -3'
miRNA:   3'- -CGGCU---UUUCGuCUUUCUCGAGc---UCCG- -5'
28783 5' -49.8 NC_006146.1 + 85630 0.77 0.730273
Target:  5'- gGCCaGAGAGGCAGAcAGGGGCUgGuuGGCc -3'
miRNA:   3'- -CGG-CUUUUCGUCU-UUCUCGAgCu-CCG- -5'
28783 5' -49.8 NC_006146.1 + 61479 0.82 0.480979
Target:  5'- gGCCGAGuGGCAGGAucaccAGGGCUCcgagGAGGCc -3'
miRNA:   3'- -CGGCUUuUCGUCUU-----UCUCGAG----CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 168238 0.81 0.500801
Target:  5'- gGCCGGcgccuGCAGggGGGGCcggCGGGGCg -3'
miRNA:   3'- -CGGCUuuu--CGUCuuUCUCGa--GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.