Results 21 - 40 of 395 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28783 | 5' | -49.8 | NC_006146.1 | + | 128183 | 0.75 | 0.817076 |
Target: 5'- cGCCGGGAGGCGGcccaGGGGGGCgcCGcGGCg -3' miRNA: 3'- -CGGCUUUUCGUC----UUUCUCGa-GCuCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 51829 | 0.77 | 0.730273 |
Target: 5'- cCCGggGcGGCGuGGAggGGGGCUCGGGGCc -3' miRNA: 3'- cGGCuuU-UCGU-CUU--UCUCGAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 146016 | 0.8 | 0.583157 |
Target: 5'- aCCGAGGGGCAGggGGgcAGCUCcuGGCa -3' miRNA: 3'- cGGCUUUUCGUCuuUC--UCGAGcuCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 61479 | 0.82 | 0.480979 |
Target: 5'- gGCCGAGuGGCAGGAucaccAGGGCUCcgagGAGGCc -3' miRNA: 3'- -CGGCUUuUCGUCUU-----UCUCGAG----CUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 135897 | 0.74 | 0.859449 |
Target: 5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCGGGGCc -3' miRNA: 3'- -CGGCUUuu----CG--UCuu--UCUCGAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 135154 | 0.74 | 0.859449 |
Target: 5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCGGGGCc -3' miRNA: 3'- -CGGCUUuu----CG--UCuu--UCUCGAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 170166 | 0.77 | 0.709717 |
Target: 5'- cGCCGGccgGGGGCuGAGGGGGCUCccgaGGGCg -3' miRNA: 3'- -CGGCU---UUUCGuCUUUCUCGAGc---UCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 34005 | 0.82 | 0.471211 |
Target: 5'- cCUGGAAGGCAgGggGGGGgUCGGGGCa -3' miRNA: 3'- cGGCUUUUCGU-CuuUCUCgAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 53047 | 0.74 | 0.859449 |
Target: 5'- cGCCGAGAGGUAaGGGGGGCgggUGGGGa -3' miRNA: 3'- -CGGCUUUUCGUcUUUCUCGa--GCUCCg -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 85892 | 0.83 | 0.423974 |
Target: 5'- cGCUGGAAcuaGGguGAGAGAGCcgCGGGGCu -3' miRNA: 3'- -CGGCUUU---UCguCUUUCUCGa-GCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 85630 | 0.77 | 0.730273 |
Target: 5'- gGCCaGAGAGGCAGAcAGGGGCUgGuuGGCc -3' miRNA: 3'- -CGG-CUUUUCGUCU-UUCUCGAgCu-CCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 41592 | 0.75 | 0.834626 |
Target: 5'- gGCCGA--GGCGGAGAG-GCcCGGGGg -3' miRNA: 3'- -CGGCUuuUCGUCUUUCuCGaGCUCCg -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 167371 | 0.77 | 0.709717 |
Target: 5'- cGCCGGccgGGGGCuGAGGGGGCUCccgaGGGCg -3' miRNA: 3'- -CGGCU---UUUCGuCUUUCUCGAGc---UCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 52504 | 0.79 | 0.593695 |
Target: 5'- gGCCGAGuuggagaucuGGGCgGGAAAGAGgaCGAGGCc -3' miRNA: 3'- -CGGCUU----------UUCG-UCUUUCUCgaGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 169170 | 0.81 | 0.500801 |
Target: 5'- gGCCGGcgccuGCAGggGGGGCcggCGGGGCg -3' miRNA: 3'- -CGGCUuuu--CGUCuuUCUCGa--GCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 95451 | 0.82 | 0.480979 |
Target: 5'- aGCCGAGAagGGCAGGAaggGGGGCUCuGAGaGCu -3' miRNA: 3'- -CGGCUUU--UCGUCUU---UCUCGAG-CUC-CG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 136269 | 0.74 | 0.859449 |
Target: 5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCGGGGCc -3' miRNA: 3'- -CGGCUUuu----CG--UCuu--UCUCGAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 135990 | 0.74 | 0.859449 |
Target: 5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCGGGGCc -3' miRNA: 3'- -CGGCUUuu----CG--UCuu--UCUCGAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 135526 | 0.74 | 0.859449 |
Target: 5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCGGGGCc -3' miRNA: 3'- -CGGCUUuu----CG--UCuu--UCUCGAGCUCCG- -5' |
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28783 | 5' | -49.8 | NC_006146.1 | + | 135247 | 0.74 | 0.859449 |
Target: 5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCGGGGCc -3' miRNA: 3'- -CGGCUUuu----CG--UCuu--UCUCGAGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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