miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 59195 0.67 0.914377
Target:  5'- uGGcCUGcuccauCCUGCAGGgcuccCCCACCu -3'
miRNA:   3'- -CCaGACcuuu--GGACGUCCac---GGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 110540 0.67 0.914377
Target:  5'- ----cGGAGACCuccUGUucaaagAGGcUGCCCACCg -3'
miRNA:   3'- ccagaCCUUUGG---ACG------UCC-ACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 75196 0.67 0.908445
Target:  5'- uGGUCUGGc--CCUggacGUAGGcguacuUGCCCugCa -3'
miRNA:   3'- -CCAGACCuuuGGA----CGUCC------ACGGGugG- -5'
28786 3' -55.5 NC_006146.1 + 159712 0.67 0.908445
Target:  5'- gGGUUUcGGugGCUucaUGguGGcGCCCGCCu -3'
miRNA:   3'- -CCAGA-CCuuUGG---ACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 5205 0.67 0.908445
Target:  5'- gGGcCUGGGggAGCUaggggUGCAGGUccuuGCCgGCCu -3'
miRNA:   3'- -CCaGACCU--UUGG-----ACGUCCA----CGGgUGG- -5'
28786 3' -55.5 NC_006146.1 + 141052 0.67 0.908445
Target:  5'- cGUCUuGucAAACgUGCGGGUGCCCugGCUc -3'
miRNA:   3'- cCAGAcC--UUUGgACGUCCACGGG--UGG- -5'
28786 3' -55.5 NC_006146.1 + 33096 0.67 0.908445
Target:  5'- cGGcUCUGGGgcAGCC---GGGUGgCCGCCg -3'
miRNA:   3'- -CC-AGACCU--UUGGacgUCCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 119045 0.67 0.90723
Target:  5'- gGGUCUGuuuuacgcacuGGCCUGCAaccgcaGCCCACCu -3'
miRNA:   3'- -CCAGACcu---------UUGGACGUcca---CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 89067 0.67 0.90228
Target:  5'- gGGUaUGG-AGCCUGCuGGUGUuguggCCACg -3'
miRNA:   3'- -CCAgACCuUUGGACGuCCACG-----GGUGg -5'
28786 3' -55.5 NC_006146.1 + 166530 0.67 0.90228
Target:  5'- cGGcCUgGGGAGCCcGCGGG-GCCgugGCCa -3'
miRNA:   3'- -CCaGA-CCUUUGGaCGUCCaCGGg--UGG- -5'
28786 3' -55.5 NC_006146.1 + 40011 0.67 0.895886
Target:  5'- cGGUgUGGGcguagcagggGGCCUGCuGGggGCCguaGCCg -3'
miRNA:   3'- -CCAgACCU----------UUGGACGuCCa-CGGg--UGG- -5'
28786 3' -55.5 NC_006146.1 + 135280 0.67 0.889265
Target:  5'- aGGUUggggagugGGggGCUaagGCAGcUGCCCACa -3'
miRNA:   3'- -CCAGa-------CCuuUGGa--CGUCcACGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 132603 0.67 0.889265
Target:  5'- uGGggCUGGGAaagauggaaaggGCCgGCAGuGUgGCCCGCUc -3'
miRNA:   3'- -CCa-GACCUU------------UGGaCGUC-CA-CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 85565 0.67 0.889265
Target:  5'- cGGUC-GGggGCaCguggggugGCAGGaggcagccGCCCGCCu -3'
miRNA:   3'- -CCAGaCCuuUG-Ga-------CGUCCa-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 155552 0.68 0.88242
Target:  5'- aGGgcgUUGG-AGCCgggcucgcGCGGGgcGCCCGCCa -3'
miRNA:   3'- -CCa--GACCuUUGGa-------CGUCCa-CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 122041 0.68 0.88242
Target:  5'- cGcCUGGAGGCCgacgGCuucGcGCCCGCCu -3'
miRNA:   3'- cCaGACCUUUGGa---CGuc-CaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 58886 0.68 0.875356
Target:  5'- ----aGGAGGCCUGCAac-GCCCACUu -3'
miRNA:   3'- ccagaCCUUUGGACGUccaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 111140 0.68 0.875356
Target:  5'- cGUCUGG-AAUC-GCAGGUaGCgCCGCUu -3'
miRNA:   3'- cCAGACCuUUGGaCGUCCA-CG-GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 122405 0.68 0.875356
Target:  5'- aGGUgCUGGAGACCcucacGCGGauccUGgCCGCCa -3'
miRNA:   3'- -CCA-GACCUUUGGa----CGUCc---ACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 63002 0.68 0.868077
Target:  5'- gGGcUCcGGGAGUCUgGCGGGUGCCCGa- -3'
miRNA:   3'- -CC-AGaCCUUUGGA-CGUCCACGGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.