miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 141916 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 69260 0.66 0.935266
Target:  5'- aGGUCcGGGuccuCCucgaagaUGCAGcugGCCCACCu -3'
miRNA:   3'- -CCAGaCCUuu--GG-------ACGUCca-CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 156680 0.66 0.935266
Target:  5'- aGGUUUGGGGcGgCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCUU-UgGACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 72333 0.66 0.930764
Target:  5'- uGGUCUGGcaugAGGCCUucGCuuGG-GCCCuggACCg -3'
miRNA:   3'- -CCAGACC----UUUGGA--CGu-CCaCGGG---UGG- -5'
28786 3' -55.5 NC_006146.1 + 131985 0.66 0.92607
Target:  5'- --cUUGGGAACaCUGCAGGUGauguugacuucugcaCCugCa -3'
miRNA:   3'- ccaGACCUUUG-GACGUCCACg--------------GGugG- -5'
28786 3' -55.5 NC_006146.1 + 33334 0.66 0.925537
Target:  5'- gGGUCcGGGugcuCCgggGCagccGGGUGgCCGCCg -3'
miRNA:   3'- -CCAGaCCUuu--GGa--CG----UCCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 125618 0.66 0.925537
Target:  5'- uGGUCUGGcGGGCCU-CAGGgGCaUCAUCu -3'
miRNA:   3'- -CCAGACC-UUUGGAcGUCCaCG-GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 45318 0.66 0.925537
Target:  5'- ----aGGAAagaguGCCUGCGGGUuCCCAUUg -3'
miRNA:   3'- ccagaCCUU-----UGGACGUCCAcGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 116710 0.66 0.925537
Target:  5'- ----cGGAGACCggGCAGGUGCagauCCcCCu -3'
miRNA:   3'- ccagaCCUUUGGa-CGUCCACG----GGuGG- -5'
28786 3' -55.5 NC_006146.1 + 95015 0.66 0.925537
Target:  5'- aGGUgCUGGAAuua--CGGGaGCCCGCCg -3'
miRNA:   3'- -CCA-GACCUUuggacGUCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 54804 0.66 0.925537
Target:  5'- ----cGGGGACCcuCGGGUGgCCGCCa -3'
miRNA:   3'- ccagaCCUUUGGacGUCCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 24201 0.66 0.925537
Target:  5'- aGGgCUGG--GCCUGCgagguucuguuGGGgccggggccGCCCACCg -3'
miRNA:   3'- -CCaGACCuuUGGACG-----------UCCa--------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 169160 0.67 0.920075
Target:  5'- cGG-CgGGAGgggccggcGCCUGCAGGggggGCCgGCg -3'
miRNA:   3'- -CCaGaCCUU--------UGGACGUCCa---CGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 71453 0.67 0.920075
Target:  5'- cGGcUCUGGGGAUgUGgaacuguuucCAGG-GCCUGCCg -3'
miRNA:   3'- -CC-AGACCUUUGgAC----------GUCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 167296 0.67 0.920075
Target:  5'- cGG-CgGGAGgggccggcGCCUGCAGGggggGCCgGCg -3'
miRNA:   3'- -CCaGaCCUU--------UGGACGUCCa---CGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 168228 0.67 0.920075
Target:  5'- cGG-CgGGAGgggccggcGCCUGCAGGggggGCCgGCg -3'
miRNA:   3'- -CCaGaCCUU--------UGGACGUCCa---CGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 122261 0.67 0.920075
Target:  5'- aGGcgCUGGgcACCcGCccGGaGCCCGCCc -3'
miRNA:   3'- -CCa-GACCuuUGGaCGu-CCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 120469 0.67 0.920075
Target:  5'- -aUCUGGccgcgAAGCUUGCGGccUGCCUGCCg -3'
miRNA:   3'- ccAGACC-----UUUGGACGUCc-ACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 64364 0.67 0.920075
Target:  5'- --aCUGGAG---UGgAuGGUGCCCACCa -3'
miRNA:   3'- ccaGACCUUuggACgU-CCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 11408 0.67 0.919515
Target:  5'- --gCUGGAAaagcagaGCCUGCAGGaccagGCCaaggugGCCa -3'
miRNA:   3'- ccaGACCUU-------UGGACGUCCa----CGGg-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.