miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 41680 0.66 0.94051
Target:  5'- --aCUGGAAACCgcacgaauCGGGUGCUgGCg -3'
miRNA:   3'- ccaGACCUUUGGac------GUCCACGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 43280 0.8 0.266096
Target:  5'- cGGcCUGGAGGuCCgGCAGGUGCCUAgCg -3'
miRNA:   3'- -CCaGACCUUU-GGaCGUCCACGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 45318 0.66 0.925537
Target:  5'- ----aGGAAagaguGCCUGCGGGUuCCCAUUg -3'
miRNA:   3'- ccagaCCUU-----UGGACGUCCAcGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 46924 0.69 0.820229
Target:  5'- gGGUCgcacGGGGACUcgGUcuccagccacaGGGUGCCCGCg -3'
miRNA:   3'- -CCAGa---CCUUUGGa-CG-----------UCCACGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 48635 0.69 0.828669
Target:  5'- gGGggcGGGcuCCggGCGGGUGCCCAgCg -3'
miRNA:   3'- -CCagaCCUuuGGa-CGUCCACGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 49606 0.66 0.935754
Target:  5'- uGGUgUGGAacacAAUCUguccagaggGCAGGUGCaCgGCCc -3'
miRNA:   3'- -CCAgACCU----UUGGA---------CGUCCACG-GgUGG- -5'
28786 3' -55.5 NC_006146.1 + 50548 0.71 0.71812
Target:  5'- aGGUCccgggUGGgcACCUGCAGGUuUCCagACCa -3'
miRNA:   3'- -CCAG-----ACCuuUGGACGUCCAcGGG--UGG- -5'
28786 3' -55.5 NC_006146.1 + 53016 0.73 0.597034
Target:  5'- gGGUCgauGAccAGCCU-CGGGUGCCCAUCu -3'
miRNA:   3'- -CCAGac-CU--UUGGAcGUCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 54804 0.66 0.925537
Target:  5'- ----cGGGGACCcuCGGGUGgCCGCCa -3'
miRNA:   3'- ccagaCCUUUGGacGUCCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 58886 0.68 0.875356
Target:  5'- ----aGGAGGCCUGCAac-GCCCACUu -3'
miRNA:   3'- ccagaCCUUUGGACGUccaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 59195 0.67 0.914377
Target:  5'- uGGcCUGcuccauCCUGCAGGgcuccCCCACCu -3'
miRNA:   3'- -CCaGACcuuu--GGACGUCCac---GGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 59906 0.66 0.935755
Target:  5'- --gCUGGccAACCUGCuGGUGCgCgGCUa -3'
miRNA:   3'- ccaGACCu-UUGGACGuCCACG-GgUGG- -5'
28786 3' -55.5 NC_006146.1 + 62082 0.68 0.868077
Target:  5'- cGGUCcGGcauuauAGCCguggcgGCAGGacUGCUCGCCu -3'
miRNA:   3'- -CCAGaCCu-----UUGGa-----CGUCC--ACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 63002 0.68 0.868077
Target:  5'- gGGcUCcGGGAGUCUgGCGGGUGCCCGa- -3'
miRNA:   3'- -CC-AGaCCUUUGGA-CGUCCACGGGUgg -5'
28786 3' -55.5 NC_006146.1 + 63112 0.72 0.668082
Target:  5'- ----aGGAGACCcugcGCAGGUGCCCcugggACCu -3'
miRNA:   3'- ccagaCCUUUGGa---CGUCCACGGG-----UGG- -5'
28786 3' -55.5 NC_006146.1 + 64364 0.67 0.920075
Target:  5'- --aCUGGAG---UGgAuGGUGCCCACCa -3'
miRNA:   3'- ccaGACCUUuggACgU-CCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 65115 0.72 0.637644
Target:  5'- cGUCUGGGAGCCcu-GGGUGCCCu-- -3'
miRNA:   3'- cCAGACCUUUGGacgUCCACGGGugg -5'
28786 3' -55.5 NC_006146.1 + 69260 0.66 0.935266
Target:  5'- aGGUCcGGGuccuCCucgaagaUGCAGcugGCCCACCu -3'
miRNA:   3'- -CCAGaCCUuu--GG-------ACGUCca-CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 69635 0.66 0.935755
Target:  5'- gGGUaCUGGggGCg-GCuaauGG-GCCCGCg -3'
miRNA:   3'- -CCA-GACCuuUGgaCGu---CCaCGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 71453 0.67 0.920075
Target:  5'- cGGcUCUGGGGAUgUGgaacuguuucCAGG-GCCUGCCg -3'
miRNA:   3'- -CC-AGACCUUUGgAC----------GUCCaCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.