miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 3814 0.76 0.460609
Target:  5'- aGGUCUGGGucaGGCCagGCGGGgcacccccgcUGCCCuACCg -3'
miRNA:   3'- -CCAGACCU---UUGGa-CGUCC----------ACGGG-UGG- -5'
28786 3' -55.5 NC_006146.1 + 5205 0.67 0.908445
Target:  5'- gGGcCUGGGggAGCUaggggUGCAGGUccuuGCCgGCCu -3'
miRNA:   3'- -CCaGACCU--UUGG-----ACGUCCA----CGGgUGG- -5'
28786 3' -55.5 NC_006146.1 + 11408 0.67 0.919515
Target:  5'- --gCUGGAAaagcagaGCCUGCAGGaccagGCCaaggugGCCa -3'
miRNA:   3'- ccaGACCUU-------UGGACGUCCa----CGGg-----UGG- -5'
28786 3' -55.5 NC_006146.1 + 12898 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 13265 0.72 0.688244
Target:  5'- aGGggCUGGugcccaAGACCcagGC-GGUGCCCGCCc -3'
miRNA:   3'- -CCa-GACC------UUUGGa--CGuCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 15029 0.72 0.688244
Target:  5'- aGGgagGGgcGCCUGgcCAGG-GCCCGCCg -3'
miRNA:   3'- -CCagaCCuuUGGAC--GUCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 15975 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 19053 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 20922 0.71 0.69826
Target:  5'- aGUCcGGccGACCUGCAGGcccugGCCC-CCa -3'
miRNA:   3'- cCAGaCCu-UUGGACGUCCa----CGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 22131 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 23492 0.72 0.637644
Target:  5'- cGGgCUGGuGGGCUcGCucugggAGGUGCCCGCCg -3'
miRNA:   3'- -CCaGACC-UUUGGaCG------UCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 24201 0.66 0.925537
Target:  5'- aGGgCUGG--GCCUGCgagguucuguuGGGgccggggccGCCCACCg -3'
miRNA:   3'- -CCaGACCuuUGGACG-----------UCCa--------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 25209 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 28287 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 33096 0.67 0.908445
Target:  5'- cGGcUCUGGGgcAGCC---GGGUGgCCGCCg -3'
miRNA:   3'- -CC-AGACCU--UUGGacgUCCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 33334 0.66 0.925537
Target:  5'- gGGUCcGGGugcuCCgggGCagccGGGUGgCCGCCg -3'
miRNA:   3'- -CCAGaCCUuu--GGa--CG----UCCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 34423 0.75 0.517434
Target:  5'- cGUUgGGuuACCUGCAGGUGUgUCACCa -3'
miRNA:   3'- cCAGaCCuuUGGACGUCCACG-GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 39040 0.68 0.868077
Target:  5'- ---aUGGggGCCagcagGCAGGgGCCCugUg -3'
miRNA:   3'- ccagACCuuUGGa----CGUCCaCGGGugG- -5'
28786 3' -55.5 NC_006146.1 + 40011 0.67 0.895886
Target:  5'- cGGUgUGGGcguagcagggGGCCUGCuGGggGCCguaGCCg -3'
miRNA:   3'- -CCAgACCU----------UUGGACGuCCa-CGGg--UGG- -5'
28786 3' -55.5 NC_006146.1 + 40346 0.66 0.945033
Target:  5'- uGGUaggcgUGGGGAUCUGCGGcGgagaagGCCC-CCu -3'
miRNA:   3'- -CCAg----ACCUUUGGACGUC-Ca-----CGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.