miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 85932 0.78 0.373917
Target:  5'- gGGcCUGGAuGGCCUGCGGGacuuUGCCCcCCc -3'
miRNA:   3'- -CCaGACCU-UUGGACGUCC----ACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 160208 0.7 0.784868
Target:  5'- aGUCUGuGcuGCCUGCAuGaUGCCCGCg -3'
miRNA:   3'- cCAGAC-CuuUGGACGUcC-ACGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 135263 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 88497 0.66 0.946777
Target:  5'- aGGUCUgcaaaaauugugguuGGAuuCCUGCGGcUGUCCagaguGCCa -3'
miRNA:   3'- -CCAGA---------------CCUuuGGACGUCcACGGG-----UGG- -5'
28786 3' -55.5 NC_006146.1 + 65115 0.72 0.637644
Target:  5'- cGUCUGGGAGCCcu-GGGUGCCCu-- -3'
miRNA:   3'- cCAGACCUUUGGacgUCCACGGGugg -5'
28786 3' -55.5 NC_006146.1 + 96019 0.72 0.647805
Target:  5'- uGGaCUGGAucuguGCCaccgGCAuGGUGCCgGCCg -3'
miRNA:   3'- -CCaGACCUu----UGGa---CGU-CCACGGgUGG- -5'
28786 3' -55.5 NC_006146.1 + 12898 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 15975 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 25209 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 137586 0.7 0.76634
Target:  5'- cGGUcCUGGAGcucggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU-----UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 115064 0.71 0.69826
Target:  5'- cGGUguugCUGGugGCC---GGGUGCCCACCc -3'
miRNA:   3'- -CCA----GACCuuUGGacgUCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 22131 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 3814 0.76 0.460609
Target:  5'- aGGUCUGGGucaGGCCagGCGGGgcacccccgcUGCCCuACCg -3'
miRNA:   3'- -CCAGACCU---UUGGa-CGUCC----------ACGGG-UGG- -5'
28786 3' -55.5 NC_006146.1 + 155241 0.71 0.69826
Target:  5'- gGGUCaGG--GCgUGCAGGUGCUCGgCg -3'
miRNA:   3'- -CCAGaCCuuUGgACGUCCACGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 34423 0.75 0.517434
Target:  5'- cGUUgGGuuACCUGCAGGUGUgUCACCa -3'
miRNA:   3'- cCAGaCCuuUGGACGUCCACG-GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 19053 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 50548 0.71 0.71812
Target:  5'- aGGUCccgggUGGgcACCUGCAGGUuUCCagACCa -3'
miRNA:   3'- -CCAG-----ACCuuUGGACGUCCAcGGG--UGG- -5'
28786 3' -55.5 NC_006146.1 + 135170 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 138253 0.73 0.617317
Target:  5'- cGUUgGGuuACCUGCAGGUGUguCCACa -3'
miRNA:   3'- cCAGaCCuuUGGACGUCCACG--GGUGg -5'
28786 3' -55.5 NC_006146.1 + 63112 0.72 0.668082
Target:  5'- ----aGGAGACCcugcGCAGGUGCCCcugggACCu -3'
miRNA:   3'- ccagaCCUUUGGa---CGUCCACGGG-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.